View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5659_1D_high_8 (Length: 344)

Name: NF5659_1D_high_8
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5659_1D_high_8
NF5659_1D_high_8
[»] chr7 (2 HSPs)
chr7 (12-321)||(39037805-39038105)
chr7 (13-57)||(8113319-8113363)
[»] chr3 (1 HSPs)
chr3 (12-71)||(44880063-44880122)
[»] chr4 (2 HSPs)
chr4 (10-71)||(1842808-1842869)
chr4 (23-71)||(41508903-41508951)
[»] chr8 (2 HSPs)
chr8 (12-71)||(9137932-9137991)
chr8 (12-70)||(35824362-35824420)
[»] chr2 (1 HSPs)
chr2 (12-71)||(25622064-25622123)
[»] chr1 (1 HSPs)
chr1 (8-71)||(12028370-12028433)
[»] chr6 (1 HSPs)
chr6 (12-65)||(11680282-11680335)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 321
Target Start/End: Complemental strand, 39038105 - 39037805
Alignment:
Q  12 atgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataaggnnnnnnnnnnnnnnnnnnnnatcatattacacctaaaacc 111  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||                    ||||||||||||||||||||    
T  39038105 atgaagaggtaataaaatcacaacaatgaactaataaattttatgatctattatataaggttttttttttt---------atcatattacacctaaaacc 39038015  T
Q  112 cgtaaaactgtaggaacgactctcaattaaatttcataaaaaattatgaaatcttataaattctatgaaggtttaagagttataggggcgagttgtttta 211  Q
     |||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  39038014 tgtaaaactctaggaacgactctcagttaaatttcataaaacattatgaaatcttataaattctctgaaggtttaagagttataggggagagttgtttta 39037915  T
Q  212 ttaaataaagagtatatactgtgccataaaaaataaaagcttgagcattttgattgctggtattttctctctttctctttccctttctgataatcgaagt 311  Q
     |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39037914 ataaataaagagtatatactgtgccataaaaaataaaagctcgagcattttgattgcttgtattttctctctttctctttccctttctgataatcgaagt 39037815  T
Q  312 ttaaggaaga 321  Q
    ||||||||||    
T  39037814 ttaaggaaga 39037805  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 8113363 - 8113319
Alignment:
Q  13 tgaagaggtaataaaatcacaacaatggactaataaattttatga 57  Q
    ||||||| |||||||||||||||||||  |||| |||||||||||    
T  8113363 tgaagagttaataaaatcacaacaatgagctaacaaattttatga 8113319  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 44880063 - 44880122
Alignment:
Q  12 atgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataagg 71  Q
    |||||||| ||||||||| ||||||||| ||||| |||||||||||| |||||| |||||    
T  44880063 atgaagagttaataaaattacaacaatgaactaacaaattttatgatgtattatgtaagg 44880122  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 1842869 - 1842808
Alignment:
Q  10 agatgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataagg 71  Q
    |||||||||| ||||||||||||||||||| ||||| |||  ||||||  ||||||||||||    
T  1842869 agatgaagagctaataaaatcacaacaatgaactaaaaaaaattatgacgtattatataagg 1842808  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 41508951 - 41508903
Alignment:
Q  23 ataaaatcacaacaatggactaataaattttatgatctattatataagg 71  Q
    ||||||||||||||||| ||||| ||| |||||||| ||| ||||||||    
T  41508951 ataaaatcacaacaatgaactaaaaaaatttatgatatatcatataagg 41508903  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 9137932 - 9137991
Alignment:
Q  12 atgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataagg 71  Q
    |||||||| ||||||||||||||||||| ||||| ||| ||| |||  ||||||||||||    
T  9137932 atgaagagttaataaaatcacaacaatgaactaaaaaaatttgtgaagtattatataagg 9137991  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 35824362 - 35824420
Alignment:
Q  12 atgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataag 70  Q
    ||||| || |||||||||||||||||||  |||| ||||||||| || |||||||||||    
T  35824362 atgaaaagttaataaaatcacaacaatgagctaacaaattttataatgtattatataag 35824420  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 25622064 - 25622123
Alignment:
Q  12 atgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataagg 71  Q
    |||||||  ||||||||||||||||||  ||||| |||||||||||| |||||| |||||    
T  25622064 atgaagaattaataaaatcacaacaataaactaacaaattttatgatgtattatgtaagg 25622123  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 12028370 - 12028433
Alignment:
Q  8 tgagatgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataagg 71  Q
    |||||||||||| |||||||||||||| |||   |||| ||||||||| || ||||||||||||    
T  12028370 tgagatgaagagttaataaaatcacaataataagctaacaaattttattatgtattatataagg 12028433  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 11680335 - 11680282
Alignment:
Q  12 atgaagaggtaataaaatcacaacaatggactaataaattttatgatctattat 65  Q
    |||||||| |||||||||||||||||||  |||| |||||||| ||| ||||||    
T  11680335 atgaagagttaataaaatcacaacaatgagctaacaaattttacgatgtattat 11680282  T

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