View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5659_1D_low_1 (Length: 695)

Name: NF5659_1D_low_1
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5659_1D_low_1
NF5659_1D_low_1
[»] chr8 (5 HSPs)
chr8 (1-360)||(26376986-26377341)
chr8 (422-662)||(26377451-26377691)
chr8 (256-341)||(30169096-30169181)
chr8 (374-425)||(26377373-26377424)
chr8 (374-407)||(18147860-18147893)
[»] chr2 (1 HSPs)
chr2 (541-672)||(23457191-23457320)
[»] chr3 (1 HSPs)
chr3 (477-625)||(366062-366210)
[»] chr1 (3 HSPs)
chr1 (90-159)||(46304385-46304454)
chr1 (160-231)||(46304547-46304618)
chr1 (374-425)||(24419582-24419633)
[»] chr4 (1 HSPs)
chr4 (1-67)||(22693218-22693284)
[»] chr5 (1 HSPs)
chr5 (8-71)||(32615798-32615861)


Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 26376986 - 26377341
Alignment:
Q  1 taatggcaaatatgaaccagaacctggatatctcattgctttcacagatattaagcctaagagagtaaatggcctatcaaagactcgtcatcttgctcga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26376986 taatggcaaatatgaaccagaacctggatatctcattgctttcacagatattaagcctaagagagtaaatggcctatcaaagactcgttatcttgctcga 26377085  T
Q  101 aataagctcataagagaaataccacggctactctattggaatgaagtattgcaataccttggattgcgagggaacatgttgattggatttttgtctcctg 200  Q
    |||||||||||| ||||||||| ||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26377086 aataagctcataggagaaatacgac-------ctattgggatgaagtattgcaataccttggattgcgagggaacatgttgattggatttttgtctcctg 26377178  T
Q  201 atatttgccaattatctagtttgtggtacttt-gatgtcagaggcaataatttgattggatccacgttaaatggagcaacaaagaaaaagcatttattat 299  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26377179 atatttgccaattatctagtttgtggtactttggatgtcagaggcaataatttgattggatccacgttaaatggagcaacaaagaaaaagtatttattat 26377278  T
Q  300 ataatcacaaaccccttttta--tgtttgaagattactgcctactccttccggtcatatttat 360  Q
    |||||||||||||||||||||  ||||||||||||||| |||||||| |||||||||||||||    
T  26377279 ataatcacaaacccctttttatgtgtttgaagattactacctactccctccggtcatatttat 26377341  T

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Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 422 - 662
Target Start/End: Original strand, 26377451 - 26377691
Alignment:
Q  422 atgtgaccggaggaagtaagtgtttgtcaatttaccaaacgaaagggatacaaactttttcaaatatgtttcacatgtgtgaaattggaccatgtgggct 521  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26377451 atgtgaccggaggaaatacatgtttgtcaatttaccaaacgaaagggatacaaactttttcaaatatgtttcgcatgtgtgaaattggaccatgtgggct 26377550  T
Q  522 aattgatcaaacaattgttttgtgccaaactttggatgatgatgtgattatctgcatacctctttgttccgttgattggtatatcgcttgggttttaaaa 621  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26377551 aattgatcaaacaattgttttgtgccaaactttggatgatgatgtgatcatctgcatacctctttgttccgttgattggtatatcgcttgggttttaaaa 26377650  T
Q  622 ttgtcaattaggagtctatcttcggcacaaaggcataactc 662  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  26377651 ttgttaattagtagtctatcttcggcacaaaggcataactc 26377691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 30169096 - 30169181
Alignment:
Q  256 tggatccacgttaaatggagcaacaaagaaaaagcatttattatataatcacaaacccctttttatgtttgaagattactgcctac 341  Q
    ||||||||| ||||||||||||||||||||||  ||| |||||||| |||||| |||||| ||||||| ||||||| ||| |||||    
T  30169096 tggatccacattaaatggagcaacaaagaaaacacatatattatatgatcacagacccctctttatgtctgaagatgactacctac 30169181  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 374 - 425
Target Start/End: Original strand, 26377373 - 26377424
Alignment:
Q  374 aactaatgtatccagtcataattataggtcagatgcattacatattcaatgt 425  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||||||||    
T  26377373 aactaatgtatccggtcataattataggctagatgcattacatattcaatgt 26377424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 407
Target Start/End: Original strand, 18147860 - 18147893
Alignment:
Q  374 aactaatgtatccagtcataattataggtcagat 407  Q
    ||||||||||||||||||||||||||||||||||    
T  18147860 aactaatgtatccagtcataattataggtcagat 18147893  T

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Target: chr2 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 541 - 672
Target Start/End: Original strand, 23457191 - 23457320
Alignment:
Q  541 ttgtgccaaactttggatgatgatgtgattatctgcatacctctttgttccgttgattggtatatcgcttggg--ttttaaaattgtcaattaggagtct 638  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||    |||||||||     
T  23457191 ttgtgccaaactttggatgatgatgtgattatttgcatacctctttgttccgttgattggtatatcgcttgggttttttaaaattg----ttaggagtcc 23457286  T
Q  639 atcttcggcacaaaggcataactctccacttgcc 672  Q
    ||||||||||||||||||| ||||||||| ||||    
T  23457287 atcttcggcacaaaggcatgactctccacctgcc 23457320  T

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Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 477 - 625
Target Start/End: Complemental strand, 366210 - 366062
Alignment:
Q  477 tttttcaaatatgtttcacatgtgtgaaattggaccatgtgggctaattgatcaaacaattgttttgtgccaaactttggatgatgatgtgattatctgc 576  Q
    |||||||||||||| | ||| |||||||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||| ||||||||||||||| | |    
T  366210 tttttcaaatatgtctgacaagtgtgaaattggaccatgggggctaattgatccaacaattattttgtgccaagctttgggtgatgatgtgattatttac 366111  T
Q  577 atacctctttgttccgttgattggtatatcgcttgggttttaaaattgt 625  Q
    |||||| | ||||| | |||||  ||||||||||||||||| |||||||    
T  366110 atacctttctgttctgctgattcttatatcgcttgggttttcaaattgt 366062  T

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Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 46304385 - 46304454
Alignment:
Q  90 atcttgctcgaaataagctcataagagaaataccacggctactctattggaatgaagtattgcaatacct 159  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||    
T  46304385 atcttgctcgaaataagctcataggagagataccaaggctactctattggaatgaagtattgcaatacct 46304454  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 46304547 - 46304618
Alignment:
Q  160 tggattgcgagggaacatgttgattggatttttgtctcctgatatttgccaattatctagtttgtggtactt 231  Q
    ||||||||||||||| ||||||| |||| |||||||||| |||||||||||||||||| |||||||||||||    
T  46304547 tggattgcgagggaatatgttgactggaattttgtctccggatatttgccaattatctggtttgtggtactt 46304618  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 374 - 425
Target Start/End: Original strand, 24419582 - 24419633
Alignment:
Q  374 aactaatgtatccagtcataattataggtcagatgcattacatattcaatgt 425  Q
    |||||||||||||||||||||||||| ||||||| |||||  ||||||||||    
T  24419582 aactaatgtatccagtcataattataagtcagatacattaattattcaatgt 24419633  T

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Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22693218 - 22693284
Alignment:
Q  1 taatggcaaatatgaaccagaacctggatatctcattgctttcacagatattaagcctaagagagta 67  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22693218 taatagcaaatacgaaccagaacctggatatctcattgctttcacaaatattaagcctaagagagta 22693284  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 32615861 - 32615798
Alignment:
Q  8 aaatatgaaccagaacctggatatctcattgctttcacagatattaagcctaagagagtaaatg 71  Q
    ||||||||||||||||||||| |||||||||||||||| |||  || |||||| ||||| ||||    
T  32615861 aaatatgaaccagaacctggagatctcattgctttcacggatcataggcctaaaagagtcaatg 32615798  T

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