View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5659_1D_low_12 (Length: 337)
Name: NF5659_1D_low_12
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 56 - 332
Target Start/End: Complemental strand, 27724105 - 27723830
Alignment:
| Q |
56 |
aatccatggaattttgaatcagtgttatctgatcatagatagatactcatttatcatgcattcttcacatccacatttacataatggttatcaacactaa |
155 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
27724105 |
aatccatggaattttgaatcagtgttacctgatcatagatagatactcatttatcatgcattcttcacatccacattcacataatg-ttatcaactctaa |
27724007 |
T |
|
| Q |
156 |
aatctgtttattgaatcaaaatcaaaatgtcttgcaagctttgtagcaccgacactttatattgaaagtgtgtccaatattcgacattttggtttctagc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27724006 |
aatctgtttattgaatcaaaatcaaaatgtcttgcaaactttgtagcaccgacactttatatagaaagtgtgtccaatattcgacattttggtttctagc |
27723907 |
T |
|
| Q |
256 |
acactgacacgacaccaacaaatggggttatatattcaatcactttcattttcttaaattataaatggcgtcttcat |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27723906 |
acactgacacgacaccaacaaatggggttatatattcaatcactttcattttcttaaattataaatggcgtcttcat |
27723830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 27724161 - 27724131
Alignment:
| Q |
1 |
aggtaatggttatttccattgagctaacttg |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27724161 |
aggtaatggttatttccattgagctaacttg |
27724131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 50187342 - 50187310
Alignment:
| Q |
285 |
atatattcaatcactttcattttcttaaattat |
317 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
50187342 |
atatattcaatcacttttattttcttaaattat |
50187310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 286 - 317
Target Start/End: Complemental strand, 43434555 - 43434524
Alignment:
| Q |
286 |
tatattcaatcactttcattttcttaaattat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
43434555 |
tatattcaatcactttcattttcttaaattat |
43434524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 286 - 317
Target Start/End: Original strand, 23817987 - 23818018
Alignment:
| Q |
286 |
tatattcaatcactttcattttcttaaattat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23817987 |
tatattcaatcactttcattttcttaaattat |
23818018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 19388964 - 19388931
Alignment:
| Q |
286 |
tatattcaatcactttcattttcttaaattataa |
319 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
19388964 |
tatattcaatcactttcatttccttaaattataa |
19388931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 30585122 - 30585150
Alignment:
| Q |
289 |
attcaatcactttcattttcttaaattat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30585122 |
attcaatcactttcattttcttaaattat |
30585150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 34406468 - 34406440
Alignment:
| Q |
289 |
attcaatcactttcattttcttaaattat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34406468 |
attcaatcactttcattttcttaaattat |
34406440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 5037259 - 5037227
Alignment:
| Q |
192 |
agctttgtagcaccgacactttatattgaaagt |
224 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
5037259 |
agctatgtagcaccgacactttatattgaaagt |
5037227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University