View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5659_1D_low_15 (Length: 330)
Name: NF5659_1D_low_15
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_low_15 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0564 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 39490053 - 39490365
Alignment:
| Q |
18 |
acatcaatacatgctaaataaactgaactgatttgaaccatattaatggttcagtaccttaaaaccacttcagtcagttctattgacaataatataaact |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39490053 |
acatcaatacatggtaaataaactgaactgatttgaaccatattaatggttcagtaccttaaaaccacttcagccagttctattgacaataatataaact |
39490152 |
T |
|
| Q |
118 |
ataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagagagcctgaacagaatcatctttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39490153 |
ataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagagagcctgaacagaatcatctttc |
39490252 |
T |
|
| Q |
218 |
attgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgtaagccatcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39490253 |
attgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgcaagccatcc |
39490352 |
T |
|
| Q |
318 |
ttgcaagatttgg |
330 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39490353 |
ttgcaagatttgg |
39490365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 7505445 - 7505396
Alignment:
| Q |
120 |
aaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaacca |
169 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
7505445 |
aaaaaaattataaaaatgatagaactttaaaagccatgccttcaaaacca |
7505396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 12748984 - 12748672
Alignment:
| Q |
18 |
acatcaatacatgctaaataaactgaactgatttgaaccatattaatggttcagtaccttaaaaccacttcagtcagttctattgacaataatataaact |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12748984 |
acatcaatacatggtaaataaactgaactgatttgaaccatattaatggttcagtaccttaaaaccacttcagccagttctattgacaataatataaact |
12748885 |
T |
|
| Q |
118 |
ataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagagagcctgaacagaatcatctttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12748884 |
ataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagagagcctgaacagaatcatctttc |
12748785 |
T |
|
| Q |
218 |
attgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgtaagccatcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12748784 |
attgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgcaagccatcc |
12748685 |
T |
|
| Q |
318 |
ttgcaagatttgg |
330 |
Q |
| |
|
||||||||||||| |
|
|
| T |
12748684 |
ttgcaagatttgg |
12748672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 109 - 330
Target Start/End: Original strand, 24683429 - 24683650
Alignment:
| Q |
109 |
atataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagagagcctgaacagaa |
208 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
24683429 |
atataaactataaaaccattgtaaaaatgatagaactttaaaaatcataccttcaaaaccatgtaaccagctacgtgcgcacttgagagcctgaacaaaa |
24683528 |
T |
|
| Q |
209 |
tcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgt |
308 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||||||||| | |
|
|
| T |
24683529 |
tcatctttcattgaatttctatacttattcacaactcgggcgccaatactaaatgtagattctgatgccaccgttgttatggaaatactcaatatattgc |
24683628 |
T |
|
| Q |
309 |
aagccatccttgcaagatttgg |
330 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
24683629 |
aagccatccttgcaggatttgg |
24683650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 86 - 330
Target Start/End: Complemental strand, 27971672 - 27971428
Alignment:
| Q |
86 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27971672 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
27971573 |
T |
|
| Q |
186 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27971572 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgt |
27971473 |
T |
|
| Q |
286 |
tattggaatactcaatatatcgtaagccatccttgcaagatttgg |
330 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27971472 |
tattggaatactcaatatatcgcaagccatccttgcaagatttgg |
27971428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 86 - 330
Target Start/End: Original strand, 6885501 - 6885745
Alignment:
| Q |
86 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6885501 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgcaaccagctacgtg |
6885600 |
T |
|
| Q |
186 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6885601 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgt |
6885700 |
T |
|
| Q |
286 |
tattggaatactcaatatatcgtaagccatccttgcaagatttgg |
330 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6885701 |
tattggaatactcaatatatcgcaagccatccttgcaagatttgg |
6885745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 86 - 330
Target Start/End: Complemental strand, 33985285 - 33985041
Alignment:
| Q |
86 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
185 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33985285 |
ttcagtcagttctatcgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagttacgtg |
33985186 |
T |
|
| Q |
186 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgt |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33985185 |
cgcacaagagagcctgaacagaatcatctttcattgaacttatatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgt |
33985086 |
T |
|
| Q |
286 |
tattggaatactcaatatatcgtaagccatccttgcaagatttgg |
330 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
33985085 |
tattggaatactcaatatatcgcaaaccatccttgcaagatttgg |
33985041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 86 - 330
Target Start/End: Original strand, 3410773 - 3411017
Alignment:
| Q |
86 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
185 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3410773 |
ttcaatcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
3410872 |
T |
|
| Q |
186 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgt |
285 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3410873 |
cgcacaagagagcctgaacataatcatctttcatttaacttctatacctattcacaactcgggcgccaatactaaacacagattctgatgccaccgttgt |
3410972 |
T |
|
| Q |
286 |
tattggaatactcaatatatcgtaagccatccttgcaagatttgg |
330 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3410973 |
tattggaatactcaatatatcgcaagccatccttgcaagatttgg |
3411017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 86 - 330
Target Start/End: Complemental strand, 20142759 - 20142515
Alignment:
| Q |
86 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
185 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20142759 |
ttcagtcagttctcttgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctatgtg |
20142660 |
T |
|
| Q |
186 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgt |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
20142659 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatacctattcacaacttgggcgccaatactaaacgtagattctaatgccactgttgt |
20142560 |
T |
|
| Q |
286 |
tattggaatactcaatatatcgtaagccatccttgcaagatttgg |
330 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20142559 |
tattggaatactcaatatatcgcaagccatccttgcaagatttgg |
20142515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 86 - 330
Target Start/End: Original strand, 22190080 - 22190324
Alignment:
| Q |
86 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
185 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22190080 |
ttcagtcagttctcttgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctatgtg |
22190179 |
T |
|
| Q |
186 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgt |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
22190180 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatacctattcacaacttgggcgccaatactaaacgtagattctaatgccactgttgt |
22190279 |
T |
|
| Q |
286 |
tattggaatactcaatatatcgtaagccatccttgcaagatttgg |
330 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22190280 |
tattggaatactcaatatatcgcaagccatccttgcaagatttgg |
22190324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 27966651 - 27966700
Alignment:
| Q |
120 |
aaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaacca |
169 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
27966651 |
aaaaaaattgtaaaaatgatagaactttaaaagtcatgccttcaaaacca |
27966700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 100 - 330
Target Start/End: Original strand, 4971288 - 4971518
Alignment:
| Q |
100 |
ttgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagagagcc |
199 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4971288 |
ttgacaacaatataaactataaaacaattgtaaaaatgatagaactataaaaatcataccttcaaaaccatgtaactagctacgtgcgcacaagagagcc |
4971387 |
T |
|
| Q |
200 |
tgaacagaatcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4971388 |
tgaacagaatcatctttcattgaacttctatacttattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactca |
4971487 |
T |
|
| Q |
300 |
atatatcgtaagccatccttgcaagatttgg |
330 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
4971488 |
atatatcgcaagccatccttgcaagatttgg |
4971518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 97 - 330
Target Start/End: Original strand, 4696708 - 4696933
Alignment:
| Q |
97 |
ctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagaga |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4696708 |
ctattgacaataatataaactataaaacaattgtaaaaatgatagaacta--------ataccttcaaaaccatgtaaccagctacgtgcgcacaagaga |
4696799 |
T |
|
| Q |
197 |
gcctgaacagaatcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatac |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4696800 |
gcctgaacagaatcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatac |
4696899 |
T |
|
| Q |
297 |
tcaatatatcgtaagccatccttgcaagatttgg |
330 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
4696900 |
tcaatatatcgcaagccatccttgcaagatttgg |
4696933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 6453289 - 6453254
Alignment:
| Q |
108 |
aatataaactataaaacaattgtaaaaatgatagaa |
143 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6453289 |
aatataaactataaaataattgtaaaaatgatagaa |
6453254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 109 - 327
Target Start/End: Original strand, 8097207 - 8097425
Alignment:
| Q |
109 |
atataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagagagcctgaacagaa |
208 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||| |||||| |||||| ||||||||||||| | ||||||| ||| |||| || |||| | |
|
|
| T |
8097207 |
atataaactatataaccatttaaaaaatgatagaacattaaaaatggtacctttaaaaccatgtaactaactacgtgtgcaaaagacagatggaaccaat |
8097306 |
T |
|
| Q |
209 |
tcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgt |
308 |
Q |
| |
|
||||||||||||||||| |||||| |||||| |||||| | |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8097307 |
tcatctttcattgaactactatacttattcagaactcgagagccaatactaaaaccatattctgatgccaccgttgttattggaatactcaatatatcgc |
8097406 |
T |
|
| Q |
309 |
aagccatccttgcaagatt |
327 |
Q |
| |
|
||| |||||||| |||||| |
|
|
| T |
8097407 |
aagtcatccttgtaagatt |
8097425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 327
Target Start/End: Complemental strand, 12828065 - 12827846
Alignment:
| Q |
109 |
atataaactataaaacaattgtaaaaatgatagaactataaaa-accataccttcaaaaccatgtaaccagctacgtgcgcacaagagagcctgaacaga |
207 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| |||| | ||||||||| || |||||||| | ||||||| ||||| ||||| ||||| || |
|
|
| T |
12828065 |
atataaactataaaaccattttaaaaatgatagaacgtcaaaacaaaataccttcacaatcatgtaactaactacgtgtgcacatgagagtttgaactga |
12827966 |
T |
|
| Q |
208 |
atcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcg |
307 |
Q |
| |
|
| ||||||||| |||||| |||| ||||| |||||| | ||||||| |||| | |||||| ||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
12827965 |
tttatctttcatggaacttacatacttattccgaactcgagagccaatattaaaaaccgattcttatgccactgtttttattgaaatactcaatatatcg |
12827866 |
T |
|
| Q |
308 |
taagccatccttgcaagatt |
327 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
12827865 |
caagccatccttacaagatt |
12827846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 143
Target Start/End: Original strand, 45451601 - 45451636
Alignment:
| Q |
108 |
aatataaactataaaacaattgtaaaaatgatagaa |
143 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45451601 |
aatataaactataaaataattgtaaaaatgatagaa |
45451636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0564 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 10843 - 10912
Alignment:
| Q |
18 |
acatcaatacatgctaaataaactgaactgatttgaaccatattaatggttcagtaccttaaaaccactt |
87 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10843 |
acatcaatacatggtaaataaactgaactgatttgaaccatattaatggttcagtaccttaaaaccactt |
10912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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