View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5659_1D_low_16 (Length: 317)

Name: NF5659_1D_low_16
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5659_1D_low_16
NF5659_1D_low_16
[»] chr4 (15 HSPs)
chr4 (145-300)||(38147357-38147519)
chr4 (179-294)||(12639721-12639836)
chr4 (180-294)||(28103806-28103920)
chr4 (178-268)||(917682-917772)
chr4 (201-288)||(23643431-23643518)
chr4 (172-288)||(43012754-43012870)
chr4 (172-288)||(54714873-54714989)
chr4 (201-266)||(12639208-12639273)
chr4 (204-266)||(28104360-28104421)
chr4 (204-266)||(919115-919176)
chr4 (259-290)||(918651-918682)
chr4 (177-240)||(25163428-25163491)
chr4 (172-266)||(43013130-43013224)
chr4 (172-240)||(12629834-12629902)
chr4 (252-292)||(23037998-23038038)
[»] chr2 (8 HSPs)
chr2 (173-294)||(4329599-4329720)
chr2 (172-294)||(39865298-39865420)
chr2 (172-294)||(29770766-29770888)
chr2 (180-288)||(9074605-9074713)
chr2 (160-288)||(30674429-30674557)
chr2 (179-266)||(4330136-4330222)
chr2 (184-288)||(9914204-9914308)
chr2 (204-266)||(29771299-29771360)
[»] chr3 (10 HSPs)
chr3 (11-144)||(45395426-45395560)
chr3 (172-294)||(23566889-23567011)
chr3 (174-294)||(39737724-39737844)
chr3 (182-288)||(785770-785876)
chr3 (201-288)||(30385749-30385836)
chr3 (204-266)||(39737232-39737293)
chr3 (202-288)||(53153855-53153941)
chr3 (204-266)||(23566461-23566522)
chr3 (28-94)||(50470355-50470421)
chr3 (193-266)||(53153517-53153590)
[»] scaffold0064 (1 HSPs)
scaffold0064 (11-145)||(19917-20052)
[»] chr6 (6 HSPs)
chr6 (11-144)||(17922857-17922991)
chr6 (180-288)||(8700896-8701004)
chr6 (201-288)||(12307301-12307388)
chr6 (177-288)||(604982-605096)
chr6 (201-288)||(7727381-7727468)
chr6 (172-266)||(12306970-12307064)
[»] chr7 (12 HSPs)
chr7 (172-294)||(31166954-31167076)
chr7 (184-290)||(21971546-21971651)
chr7 (193-276)||(27596002-27596084)
chr7 (169-288)||(28750927-28751045)
chr7 (173-288)||(38916392-38916507)
chr7 (184-288)||(27230474-27230578)
chr7 (180-288)||(32741787-32741895)
chr7 (171-286)||(15577468-15577578)
chr7 (173-266)||(21972092-21972184)
chr7 (173-266)||(38916045-38916138)
chr7 (233-292)||(21948149-21948208)
chr7 (172-265)||(32741473-32741566)
[»] chr8 (7 HSPs)
chr8 (179-294)||(26759210-26759325)
chr8 (181-294)||(146644-146757)
chr8 (169-288)||(308301-308420)
chr8 (180-288)||(186682-186790)
chr8 (204-266)||(147190-147251)
chr8 (172-263)||(187049-187140)
chr8 (234-288)||(25277141-25277195)
[»] chr5 (5 HSPs)
chr5 (172-294)||(39121834-39121956)
chr5 (16-144)||(3623465-3623594)
chr5 (175-288)||(14393978-14394091)
chr5 (172-288)||(25672264-25672380)
chr5 (172-287)||(20983543-20983658)
[»] chr1 (2 HSPs)
chr1 (175-288)||(40888787-40888900)
chr1 (172-240)||(23269946-23270014)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 145 - 300
Target Start/End: Original strand, 38147357 - 38147519
Alignment:
Q  145 atttaataatttgggcaatgttaaccag-------gggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaatt 237  Q
    |||||||||||||||||||| ||||| |       ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38147357 atttaataatttgggcaatgctaaccggtgctttcgggcactggataaggaacagtaaatagtcaataaataaatggatctcacttaattcatctcaatt 38147456  T
Q  238 aaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctttgatgtc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38147457 aaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctttgatgtc 38147519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 179 - 294
Target Start/End: Complemental strand, 12639836 - 12639721
Alignment:
Q  179 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagct 278  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  12639836 tggataaggaacaataaataggcaataaataaatggatctcacttaattcacctcaattaaagtgtaaaatatgtcaactaattaaaaataataaaagct 12639737  T
Q  279 atattcaatactcttt 294  Q
    ||||||||||||||||    
T  12639736 atattcaatactcttt 12639721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 28103806 - 28103920
Alignment:
Q  180 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 279  Q
    |||||||||||| |||||| ||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28103806 ggataaggaacaataaataatcattaaataaatggatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagcta 28103905  T
Q  280 tattcaatactcttt 294  Q
    |||||||||||||||    
T  28103906 tattcaatactcttt 28103920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 917682 - 917772
Alignment:
Q  178 ttggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 268  Q
    |||||||| ||||| ||||||||||||||||||||  |||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  917682 ttggataaagaacaataaatagtcaataaataaatgaatctaagttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 917772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 23643431 - 23643518
Alignment:
Q  201 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 288  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||    
T  23643431 caataaataaattgatctcacttcatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgctatattcaata 23643518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 172 - 288
Target Start/End: Original strand, 43012754 - 43012870
Alignment:
Q  172 ggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 271  Q
    |||||| ||||||||||||| ||||||| |||||||||||| ||||||| ||  || | || ||||||||||||| |||| |||||||||||||| ||||    
T  43012754 ggggcactggataaggaacaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaat 43012853  T
Q  272 aaaagctatattcaata 288  Q
    ||| | |||||||||||    
T  43012854 aaatgttatattcaata 43012870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 288
Target Start/End: Complemental strand, 54714989 - 54714873
Alignment:
Q  172 ggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 271  Q
    |||||||||||||| ||| |  |||||| |||||||||||| ||| |||||| ||| |||| ||||||||||||| |||| | || ||||||||| ||||    
T  54714989 ggggcattggataaagaataaaaaataggcaataaataaatggatttcacttgatttatcttaattaaagtgtaaaatattttaaataattaaaattaat 54714890  T
Q  272 aaaagctatattcaata 288  Q
    ||| | |||||||||||    
T  54714889 aaatgttatattcaata 54714873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 12639208 - 12639273
Alignment:
Q  201 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 266  Q
    |||||||||||| |||||||||||||| | ||||||||| |||||| |||||||||||||||||||    
T  12639208 caataaataaatggatctcacttaatttacctcaattaatgtgtaaaatatgtcaactaattaaaa 12639273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 28104421 - 28104360
Alignment:
Q  204 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 266  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  28104421 taaataaatggatctcacttaattcatctcaattaaa-tgtaaaatatatcaactaattaaaa 28104360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 919176 - 919115
Alignment:
Q  204 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 266  Q
    |||||||||  |||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  919176 taaataaatgaatctcacttaattcatctcaattaaa-tgtaaaatatatcaactaattaaaa 919115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 290
Target Start/End: Original strand, 918651 - 918682
Alignment:
Q  259 aattaaaaataataaaagctatattcaatact 290  Q
    ||||||||||||||||||||||||||||||||    
T  918651 aattaaaaataataaaagctatattcaatact 918682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 25163428 - 25163491
Alignment:
Q  177 attggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 240  Q
    ||||||||||||||| ||||||| |||||||| ||| ||||| |||| ||| | ||||||||||    
T  25163428 attggataaggaacattaaatagacaataaatgaatagatcttactttatttacctcaattaaa 25163491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 266
Target Start/End: Complemental strand, 43013224 - 43013130
Alignment:
Q  172 ggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 266  Q
    |||||| |||||||| || | ||||||| |||||||||||| ||| ||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  43013224 ggggcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 43013130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 12629834 - 12629902
Alignment:
Q  172 ggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 240  Q
    |||||| ||||||||||||| ||||||| |||||||| ||| ||||| || | ||| | ||||||||||    
T  12629834 ggggcactggataaggaacattaaatagacaataaatgaatagatcttacatgatttacctcaattaaa 12629902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 23038038 - 23037998
Alignment:
Q  252 gtcaactaattaaaaataataaaagctatattcaatactct 292  Q
    ||||||||||||||| ||||||||| | |||||||||||||    
T  23038038 gtcaactaattaaaattaataaaagttgtattcaatactct 23037998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 173 - 294
Target Start/End: Original strand, 4329599 - 4329720
Alignment:
Q  173 gggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 272  Q
    ||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4329599 gggcactggataaggaacagtaaatagttaataaataaatagatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 4329698  T
Q  273 aaagctatattcaatactcttt 294  Q
    ||||||||||||||||||||||    
T  4329699 aaagctatattcaatactcttt 4329720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 39865420 - 39865298
Alignment:
Q  172 ggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 271  Q
    |||||| ||||||||||||| |||||||| | |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39865420 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 39865321  T
Q  272 aaaagctatattcaatactcttt 294  Q
    |||||||||||||||||||||||    
T  39865320 aaaagctatattcaatactcttt 39865298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 172 - 294
Target Start/End: Original strand, 29770766 - 29770888
Alignment:
Q  172 ggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 271  Q
    |||||| ||||||||||||| |||||||| | |||||||||  |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  29770766 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcagttaaagtataatatatgtcaactaattaaaaataat 29770865  T
Q  272 aaaagctatattcaatactcttt 294  Q
    |||||||||| ||||||||||||    
T  29770866 aaaagctataatcaatactcttt 29770888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 288
Target Start/End: Original strand, 9074605 - 9074713
Alignment:
Q  180 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 279  Q
    |||||| ||||| ||||||| |||||||||||| ||||||||||  || | || ||||||||||||| |||| |||||||||||||| ||||||| | ||    
T  9074605 ggataaagaacaataaatagacaataaataaatggatctcacttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgtta 9074704  T
Q  280 tattcaata 288  Q
    |||||||||    
T  9074705 tattcaata 9074713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 288
Target Start/End: Complemental strand, 30674557 - 30674429
Alignment:
Q  160 caatgttaaccaggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaacta 259  Q
    ||||| ||||| ||||||  |||||| ||||| | ||||  |||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||    
T  30674557 caatgctaaccgggggcaccggataaagaacaattaataagcaataaataaatagatctcacttgatttatcttaattaaaatgtaaaatatttcaacta 30674458  T
Q  260 attaaaaataataaaagctatattcaata 288  Q
    ||||||| ||||||| | |||||||||||    
T  30674457 attaaaattaataaatgttatattcaata 30674429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 4330222 - 4330136
Alignment:
Q  179 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 266  Q
    ||||||||||||| | ||||  || ||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  4330222 tggataaggaacaattaatatgcattaaataaatggatctcacttaattcatctcaattaaa-tgtaaaatatgttaactaattaaaa 4330136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 9914204 - 9914308
Alignment:
Q  184 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 283  Q
    |||||||| |||||||  |||||||||||  ||||||||| ||| |  | ||||||||||||| |||| |||||||| ||||| ||||||| ||||||||    
T  9914204 aaggaacaataaataggtaataaataaatgaatctcacttgatttactttaattaaagtgtaaaatatttcaactaactaaaattaataaatgctatatt 9914303  T
Q  284 caata 288  Q
    |||||    
T  9914304 caata 9914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 29771360 - 29771299
Alignment:
Q  204 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 266  Q
    |||||||||  |||||||||||||||||||||||| | ||||| |||||||||||||||||||    
T  29771360 taaataaatgaatctcacttaattcatctcaattata-tgtaaaatatgtcaactaattaaaa 29771299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 45395426 - 45395560
Alignment:
Q  11 tggacatcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctc 109  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  45395426 tggacatcaagcggtggaaaggaaaacatgggatgagagaatataattagttaatggaaagaaaaatatccaaggatggtaataacatcgtgggtttctc 45395525  T
Q  110 gtgcatggtttatgtcgtgtaataaagcattttcc 144  Q
    |||||||||||||||||||||||||||||||||||    
T  45395526 gtgcatggtttatgtcgtgtaataaagcattttcc 45395560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 23567011 - 23566889
Alignment:
Q  172 ggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 271  Q
    |||||| ||||||||||||| |||||||| | |||||||||  || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23567011 ggggcactggataaggaacaataaatagtaattaaataaatgaatatcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 23566912  T
Q  272 aaaagctatattcaatactcttt 294  Q
    |||||||||||||||||||||||    
T  23566911 aaaagctatattcaatactcttt 23566889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 174 - 294
Target Start/End: Complemental strand, 39737844 - 39737724
Alignment:
Q  174 ggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataa 273  Q
    |||| ||||||||||||| |||||||| | ||||||||| ||||| | ||||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  39737844 ggcactggataaggaacaataaatagtaattaaataaatagatcttatttaattcatctcaattaaaatataatatatgttaactaattaaaaataataa 39737745  T
Q  274 aagctatattcaatactcttt 294  Q
    ||||||||||||||| |||||    
T  39737744 aagctatattcaatattcttt 39737724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 785876 - 785770
Alignment:
Q  182 ataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctata 281  Q
    |||||||||| ||||||| |||||||||||| |||||||||| ||| | || ||| ||||||||| ||||  ||| ||||||||| ||||||  ||||||    
T  785876 ataaggaacattaaataggcaataaataaatggatctcacttgatttaccttaatcaaagtgtaaaatattgcaattaattaaaattaataattgctata 785777  T
Q  282 ttcaata 288  Q
    |||||||    
T  785776 ttcaata 785770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 30385836 - 30385749
Alignment:
Q  201 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 288  Q
    |||||||||||| ||||||| || ||| | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  30385836 caataaataaatggatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgatatattcaata 30385749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 39737232 - 39737293
Alignment:
Q  204 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 266  Q
    |||||||||  |||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  39737232 taaataaatgaatctcacttaatccatctcaattaaa-tgtaaaatatgtcaactaattaaaa 39737293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 53153941 - 53153855
Alignment:
Q  202 aataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 288  Q
    |||||||| ||  ||||||||| ||| | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  53153941 aataaatagatgaatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 53153855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 23566461 - 23566522
Alignment:
Q  204 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 266  Q
    |||||||||  |||| |||||||||||||||| |||| |||||  ||||||||||||||||||    
T  23566461 taaataaataaatcttacttaattcatctcaaataaa-tgtaaactatgtcaactaattaaaa 23566522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 50470355 - 50470421
Alignment:
Q  28 aaggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatag 94  Q
    ||||||||||||||| ||||||||  ||||| |||| ||||| | |||||||||| ||| |||||||    
T  50470355 aaggaaaacatggggagagagaattcaattagttaacggaaatataaacatccaaagatggtaatag 50470421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 53153517 - 53153590
Alignment:
Q  193 taaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 266  Q
    ||||||| |||||||||||| ||| ||| ||  || |||| ||||||||||  ||||| |||||||||||||||    
T  53153517 taaataggcaataaataaatggatttcaattggtttatctaaattaaagtgagatataagtcaactaattaaaa 53153590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 19917 - 20052
Alignment:
Q  11 tggacatcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctc 109  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||| |||||||| ||||||    
T  19917 tggacatcaagcggtggaaaggaaaacatgggatgagagaatataatcaattaatggaaagaaaaacatccaaggatgataataacatcgtggctttctc 20016  T
Q  110 gtgcatggtttatgtcgtgtaataaagcattttcca 145  Q
    ||||||||||||||||||||||||||||||||||||    
T  20017 gtgcatggtttatgtcgtgtaataaagcattttcca 20052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 17922857 - 17922991
Alignment:
Q  11 tggacatcaagcggtggaagg--aaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttct 108  Q
    ||||||||||||||||||| |  |||||||||| ||||||||||||||||  |||||||||||||||||||||||| | |||||||||||||||||||||    
T  17922857 tggacatcaagcggtggaaaggaaaaacatggg-tgagagaatataattagctaatggaaagaaaaacatccaagggtggtaatagcatcgtgggtttct 17922955  T
Q  109 cgtgcatggtttatgtcgtgtaataaagcattttcc 144  Q
    ||||||||||||||||||||||||||||||||||||    
T  17922956 cgtgcatggtttatgtcgtgtaataaagcattttcc 17922991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 288
Target Start/End: Original strand, 8700896 - 8701004
Alignment:
Q  180 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 279  Q
    |||||||||||| ||||||| ||||||||| || |||||||||| ||| | || ||||||||||||| |||| | |||||||||||| ||||||| | ||    
T  8700896 ggataaggaacaataaataggcaataaatagatggatctcacttgatttaccttaattaaagtgtaaaatattttaactaattaaaattaataaatgtta 8700995  T
Q  280 tattcaata 288  Q
    |||||||||    
T  8700996 tattcaata 8701004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 12307388 - 12307301
Alignment:
Q  201 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 288  Q
    |||||||||||| |||||||||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  12307388 caataaataaatagatctcacttgatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 12307301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 604982 - 605096
Alignment:
Q  177 attggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaac---taattaaaaataataa 273  Q
    ||||||||||||||| ||||||| |||||||||||| |||||||||| ||| | || ||||||||| ||| |||| |||||   ||||||||| ||||||    
T  604982 attggataaggaacaataaataggcaataaataaatggatctcacttgatttaccttaattaaagtataaaatatttcaactaataattaaaattaataa 605081  T
Q  274 aagctatattcaata 288  Q
    | | |||||||||||    
T  605082 atgttatattcaata 605096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 7727468 - 7727381
Alignment:
Q  201 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 288  Q
    |||||||||||||||||||||||  || | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  7727468 caataaataaattgatctcacttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 7727381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 12306970 - 12307064
Alignment:
Q  172 ggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 266  Q
    |||||| |||||||| || | ||||||| ||||||||||||  |||| | || ||| | || ||||||||||  ||||| |||||||||||||||    
T  12306970 ggggcactggataagaaataataaatagacaataaataaatgaatcttaattgatttacctaaattaaagtgagatataagtcaactaattaaaa 12307064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 31167076 - 31166954
Alignment:
Q  172 ggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 271  Q
    |||||| ||||||||||||| |||||||| | |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31167076 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 31166977  T
Q  272 aaaagctatattcaatactcttt 294  Q
    |||||||||||||||||||||||    
T  31166976 aaaagctatattcaatactcttt 31166954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 21971546 - 21971651
Alignment:
Q  184 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 283  Q
    |||||||| |||||| | | ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21971546 aaggaacaataaataataattaaataaat-gatctcacttaactcatctcaattaaagtataatatatgtcaactaattaaaaataataaaagctatatt 21971644  T
Q  284 caatact 290  Q
    |||||||    
T  21971645 caatact 21971651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 27596002 - 27596084
Alignment:
Q  193 taaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaag 276  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27596002 taaatagccaataaataaatggatctcacttaattcatctcaattaaagtgtaatata-gtcaactaattaaaaataataaaag 27596084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 169 - 288
Target Start/End: Complemental strand, 28751045 - 28750927
Alignment:
Q  169 ccaggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 268  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |    
T  28751045 ccaggggcactggataaggaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaatt 28750946  T
Q  269 aataaaagctatattcaata 288  Q
    |||||| | |||||||||||    
T  28750945 aataaatg-tatattcaata 28750927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 288
Target Start/End: Complemental strand, 38916507 - 38916392
Alignment:
Q  173 gggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 272  Q
    ||||| ||||||| ||||| ||||||| |||||||||||| |||||||||| ||| | || ||||||||||||| |||| |||||||||||||| |||||    
T  38916507 gggcactggataaagaacaataaatagacaataaataaatggatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaata 38916408  T
Q  273 aaagctatattcaata 288  Q
    || | |||||| ||||    
T  38916407 aatgttatatttaata 38916392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 27230474 - 27230578
Alignment:
Q  184 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 283  Q
    |||||||| | ||||| ||||||||||||  |||||| || ||| | || ||||||||||||| |||| |||||||||||||| ||||||| ||||||||    
T  27230474 aaggaacaattaatagacaataaataaatgaatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgctatatt 27230573  T
Q  284 caata 288  Q
    |||||    
T  27230574 caata 27230578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 288
Target Start/End: Complemental strand, 32741895 - 32741787
Alignment:
Q  180 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 279  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||  || | || ||||||||| ||| |||| ||||||| |||||| ||||||| ||||    
T  32741895 ggataatgaacaataaataagcaataaataaatggatctcacttggtttaccttaattaaagtataaaatatttcaactatttaaaattaataaatgcta 32741796  T
Q  280 tattcaata 288  Q
    |||||||||    
T  32741795 tattcaata 32741787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 286
Target Start/End: Original strand, 15577468 - 15577578
Alignment:
Q  171 aggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataa 270  Q
    ||||||| ||||||||||||| ||||||| |||     |||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |||    
T  15577468 aggggcactggataaggaacaataaatagacaa-----aaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaattaa 15577562  T
Q  271 taaaagctatattcaa 286  Q
    |||| | |||||||||    
T  15577563 taaatgatatattcaa 15577578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 21972184 - 21972092
Alignment:
Q  173 gggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 266  Q
    ||||| ||||||||||||| | || |  || |||||||||  |||||||||||||||||| ||||||| ||||| |||||||||||||||||||    
T  21972184 gggcactggataaggaacaattaaaatgcattaaataaatgaatctcacttaattcatcttaattaaa-tgtaaaatatgtcaactaattaaaa 21972092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 38916045 - 38916138
Alignment:
Q  173 gggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 266  Q
    ||||| |||||||| || | ||||||| |||||||||||| ||||||| ||  || |||| ||||||||||  ||||| |||||||||||||||    
T  38916045 gggcactggataagaaataataaataggcaataaataaatagatctcaattggtttatctaaattaaagtgagatataagtcaactaattaaaa 38916138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 21948149 - 21948208
Alignment:
Q  233 caattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactct 292  Q
    |||| ||| ||||| ||| ||||||||||||||| |||||||| || |||||||||||||    
T  21948149 caatcaaaatgtaaaataagtcaactaattaaaattaataaaaactctattcaatactct 21948208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 265
Target Start/End: Original strand, 32741473 - 32741566
Alignment:
Q  172 ggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaa 265  Q
    |||||||| |||||| || | ||||||  ||||||||||||  |||||| || ||| |||| ||||| ||||  ||||| ||||||||||||||    
T  32741473 ggggcattagataagaaataataaatatgcaataaataaatgaatctcaattgatttatctaaattatagtgagatataagtcaactaattaaa 32741566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 26759210 - 26759325
Alignment:
Q  179 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagct 278  Q
    ||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  26759210 tggataaggaacaataaatagtaattaaataaatggatctcacttaattcatctcaattaaagtataatatatgccaactaattaaaaataataaaagct 26759309  T
Q  279 atattcaatactcttt 294  Q
    ||||| ||||||||||    
T  26759310 atattaaatactcttt 26759325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 181 - 294
Target Start/End: Original strand, 146644 - 146757
Alignment:
Q  181 gataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctat 280  Q
    ||||| ||||| ||||||| || ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  146644 gataatgaacaataaatagccattaaataaatggatctcactttattaatctcaattaaagtgtaatatatgtcaactaattaaaattaataaaaactat 146743  T
Q  281 attcaatactcttt 294  Q
    ||||||||||||||    
T  146744 attcaatactcttt 146757  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 288
Target Start/End: Original strand, 308301 - 308420
Alignment:
Q  169 ccaggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 268  Q
    |||||||||  |||||| ||||| ||||||| |||||||||||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |    
T  308301 ccaggggcaccggataatgaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaatt 308400  T
Q  269 aataaaagctatattcaata 288  Q
    |||||| | |||||||||||    
T  308401 aataaatgttatattcaata 308420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 180 - 288
Target Start/End: Original strand, 186682 - 186790
Alignment:
Q  180 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 279  Q
    |||||||||||| |||||||  ||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||||||||| ||||||| | ||    
T  186682 ggataaggaacaataaatagctaataaataaatggatctcacttgatttatcttaattaaattgtaaaatatttcaactaattaaaattaataaatgtta 186781  T
Q  280 tattcaata 288  Q
    |||||||||    
T  186782 tattcaata 186790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 147251 - 147190
Alignment:
Q  204 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 266  Q
    |||||| || ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||    
T  147251 taaatatatggatctcacttaattcatcttaattaaa-tataaaatatgtcaactaattaaaa 147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 187140 - 187049
Alignment:
Q  172 ggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaatta 263  Q
    |||||| |||||||| || | ||||||| ||||||||||||  |||||| ||| || | || ||||||||||  ||||| ||||||||||||    
T  187140 ggggcactggataagaaataataaataggcaataaataaatgaatctcaattagtttacctaaattaaagtgagatataagtcaactaatta 187049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 25277195 - 25277141
Alignment:
Q  234 aattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 288  Q
    ||||||||||| | |||| | |||||||||||| ||||||| |||||||||||||    
T  25277195 aattaaagtgtgaaatattttaactaattaaaattaataaatgctatattcaata 25277141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 39121956 - 39121834
Alignment:
Q  172 ggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 271  Q
    |||||| ||||||||||||| |||||||| | |||||||||  ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  39121956 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaatttatctcaattaaagtataatatatgtcaactaattaaaaataat 39121857  T
Q  272 aaaagctatattcaatactcttt 294  Q
    ||||| |||||||||||||||||    
T  39121856 aaaagttatattcaatactcttt 39121834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 3623465 - 3623594
Alignment:
Q  16 atcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctcgtgca 114  Q
    |||||||| ||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||| | |||||||| | ||||| ||||||||||    
T  3623465 atcaagcgatggaaaggaaaatatggggtgagagaatataattagttaatggaaataaaaacatccaagggtggtaatagctttgtgggcttctcgtgca 3623564  T
Q  115 tggtttatgtcgtgtaataaagcattttcc 144  Q
    |||||| | ||||  |||||||||||||||    
T  3623565 tggtttctatcgtcaaataaagcattttcc 3623594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 288
Target Start/End: Original strand, 14393978 - 14394091
Alignment:
Q  175 gcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaa 274  Q
    |||| |||||||||||| ||||||  |||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||||||||  |||||||    
T  14393978 gcatcggataaggaacaataaataagcaataaataaatggatctcacttgatttatcttaattaaaatgtaaaatatttcaactaattaaatttaataaa 14394077  T
Q  275 agctatattcaata 288  Q
     |||||||||||||    
T  14394078 tgctatattcaata 14394091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 288
Target Start/End: Original strand, 25672264 - 25672380
Alignment:
Q  172 ggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 271  Q
    ||||||| |||||||||||| | ||||  |||||||||||| ||||||||||  || || | ||||||||||||| |||| |||||||||||||| ||||    
T  25672264 ggggcatcggataaggaacaatgaatatgcaataaataaatggatctcacttggtttatattaattaaagtgtaaaatatttcaactaattaaaattaat 25672363  T
Q  272 aaaagctatattcaata 288  Q
    ||| |||||||| ||||    
T  25672364 aaatgctatatttaata 25672380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 20983543 - 20983658
Alignment:
Q  172 ggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 271  Q
    |||||| |||||||| || | ||||||| |||||||||||| ||||||| ||  || | || ||||||||||||| |||| |||||||||||||| ||||    
T  20983543 ggggcactggataagaaaaaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaat 20983642  T
Q  272 aaaagctatattcaat 287  Q
    ||| | ||||||||||    
T  20983643 aaatgttatattcaat 20983658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 175 - 288
Target Start/End: Original strand, 40888787 - 40888900
Alignment:
Q  175 gcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaa 274  Q
    |||| ||||||| |||| | ||||| ||||| |||||| ||||| |||| ||| |||| ||||||||||||| |||| |||||||||||||| |||||||    
T  40888787 gcatcggataagaaacaattaataggcaatacataaatggatctaacttgatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaa 40888886  T
Q  275 agctatattcaata 288  Q
     |||||||||||||    
T  40888887 tgctatattcaata 40888900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 23269946 - 23270014
Alignment:
Q  172 ggggcattggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 240  Q
    |||||| ||||||||||||| ||||||| |||||||| ||| ||||| |||| ||| | ||||||||||    
T  23269946 ggggcactggataaggaacattaaatagacaataaatgaatagatcttacttgatttacctcaattaaa 23270014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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