View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5659_1D_low_19 (Length: 281)

Name: NF5659_1D_low_19
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5659_1D_low_19
NF5659_1D_low_19
[»] chr4 (1 HSPs)
chr4 (1-281)||(2620047-2620326)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 2620047 - 2620326
Alignment:
Q  1 gaaatgcaacaggtccgtgtcttggaacttgacaaattttgttggtgataatgcaagcataaccatatgtaaccagctgattttatgtgtttgttttggc 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2620047 gaaatgcaacaggtccgtgtcttggaacttgccaaattttgttggtgataatgcaagcataaccatatgtaaccagctgattttatgtgtttgttttggc 2620146  T
Q  101 gttgggggaatggtgaacgcatgttgagttagaagctatttattgcagcttttttatatcacggtgaattgacatgccttcttcgacttggaggttgatg 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  2620147 gtttggggaatggtgaacgcatgttgagttagaagctatttattgcagcttttttatatcacggtgaattgacatggcttcttcgactt-gaggttgatg 2620245  T
Q  201 gccactctcccaaacgaaccgtttctttatcagtgttcaatgtgattgattgttctgaataaagaatttgtaggattattt 281  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2620246 gccactctcccaaacaaaccgtttctttatgagtgttcaatgtgattgattgttctgaataaagaatttgtaggattattt 2620326  T

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