View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_1D_low_20 (Length: 280)
Name: NF5659_1D_low_20
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 14917563 - 14917754
Alignment:
| Q |
13 |
tttatctgacgggaatcttgcaaaatctgtctatgaaaaagagttaatggccttggtattatgcattcaacattggaggcattacttactaggaagagaa |
112 |
Q |
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| T |
14917563 |
tttatctaacgggaatcttgcaaaatttgtctatgaaaaagagttaatggccttggtattatgcattcaacattggaggcattacttactaggaagagaa |
14917662 |
T |
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| Q |
113 |
tttattgtgtatactgaccataagagcttgaagcattttctgcaacagaaagtttcatcccctgatcaacagtgttggttggccaaactgct |
204 |
Q |
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| T |
14917663 |
tttattgtgtatactgaccataagagcttgaagcattttctccaacagaaagtttcatcccctgatcaacagtgttggttggccaaactgct |
14917754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 28512488 - 28512322
Alignment:
| Q |
32 |
gcaaaatctgtctatgaaaaagagttaatggccttggtattatgcattcaacattggaggcattacttactaggaagagaatttattgtgtatactgacc |
131 |
Q |
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| T |
28512488 |
gcaaaatctgtgtatgagaaagagttaatggctcttgttttatgcattcaacattggagacattaccttctgggtagggagttcattgtgtacacagacc |
28512389 |
T |
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| Q |
132 |
ataagagcttgaagcattttctgcaacagaaagtttcatcccctgatcaacagtgttggttggccaa |
198 |
Q |
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| T |
28512388 |
acaaaagcttgaagcattttctacagcaaagaatctcatctcctgaccagcagtgttggctggccaa |
28512322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 1009310 - 1009342
Alignment:
| Q |
200 |
ctgcttatgtattatagtttatttctgcattct |
232 |
Q |
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| T |
1009310 |
ctgcttatgtattatagtttatttctgcattct |
1009342 |
T |
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