View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_1D_low_22 (Length: 263)
Name: NF5659_1D_low_22
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 3781206 - 3781460
Alignment:
| Q |
1 |
tcaagacgtcatgccaatagaatctgaaatgacttagcttttctttcttgtttaggcctaacaatttgcgatctatcggacgaacaaaatcgaaagtgtc |
100 |
Q |
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| T |
3781206 |
tcaagacgtcatgccaatagaatctgaaatgacttagcttttctttcttgtttaggcctaacaatttgcgatctatcggacgaacaaaatcgaaagtgtc |
3781305 |
T |
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| Q |
101 |
ttgtttttctgatggagttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaaggcattgtggttgggttt |
200 |
Q |
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| T |
3781306 |
ttgtttttctgatgaagttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaaggcattgtggttgggttt |
3781405 |
T |
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| Q |
201 |
gtgagatttttgttaagatgatgaatgtggagaaagtaaagtagtggaggagaaa |
255 |
Q |
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| T |
3781406 |
gtgagatttttgttaagataatgaatgtggagaaagtaaagtagtggaggagaaa |
3781460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 3767229 - 3767417
Alignment:
| Q |
8 |
gtcatgccaatagaatctgaaatgacttagcttttctttcttgtttaggcctaacaatttgcgatctatcggacgaacaaaatcgaaagtgtcttgtttt |
107 |
Q |
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| T |
3767229 |
gtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaactgtgtcttgtttt |
3767328 |
T |
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| Q |
108 |
tctgatggagttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaag---tgaggaaatgttgggaaggcattgtggt |
193 |
Q |
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| T |
3767329 |
tctgatgaagttgaagcagagagtgtgttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcattatggt |
3767417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 3776900 - 3777082
Alignment:
| Q |
8 |
gtcatgccaatagaatctgaaatgacttagcttttctttcttgtttaggcctaacaatttgcgatctatcggacgaacaaaatcgaaagtgtcttgtttt |
107 |
Q |
| |
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|||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| || || |||| |||| |
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| T |
3776900 |
gtcatgccaatataatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaaaggtatcttctttt |
3776999 |
T |
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| Q |
108 |
tctgatggagttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaaggcattgtggt |
193 |
Q |
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||| || ||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
3777000 |
tctaat---gttgaagaagtgagtgtgttacaagagataagaaggaagaagaacaaagtgaggaaatgtttggaagacattgtggt |
3777082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 3751841 - 3752016
Alignment:
| Q |
9 |
tcatgccaatagaatctgaaatgacttagcttttctttcttgtttaggcctaacaatttgcgatctatcggacgaacaaaatcgaaagtgtcttgttttt |
108 |
Q |
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| T |
3751841 |
tcatgccaatagaatctgaaatgacttagtttttctttcttgtttaggcttaacaatttgcggtctattggacgaacaaaatcaaaagtttcttgttttt |
3751940 |
T |
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| Q |
109 |
c---tgatggagttgaagt---agtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttg |
178 |
Q |
| |
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| |||| | ||| || |||||| ||||||||||| | |||||||||||||||||||||||| |||||||| |
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| T |
3751941 |
ctaatgattgtaatgatgttgaagtgagagtgttgcaagagaggagaaggaagaagaacaaagtgagaaaatgttg |
3752016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 3746023 - 3746220
Alignment:
| Q |
8 |
gtcatgccaatagaatctgaaatgacttagcttttctttcttgtttaggcctaacaatttgcgatctatcggacgaacaaaatcgaaagtgtcttgtttt |
107 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| | ||||| | |||||||||||| |||| |||| |||| |
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| T |
3746023 |
gtcatgccaaaagaatctgaaatgacttagcttttcttggttgtttaggtgtaacaatttggggtctattgaacgaacaaaatcataagtttcttctttt |
3746122 |
T |
|
| Q |
108 |
tc---tgatggagttgaagt---agtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaaggcattgtggttgggtt |
199 |
Q |
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|| |||||| | |||||| |||||| ||||||||||| | ||||||||||||||| ||||||||||| ||||||| |||||| ||||| ||||| |
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| T |
3746123 |
tcaaatgatggtgatgaagttgaagtgagggtgttgcaagagaagagaaggaagaagaaaaaagtgaggaagtgttgggtaggcatggtggtggggtt |
3746220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 3762825 - 3763000
Alignment:
| Q |
8 |
gtcatgccaatagaatctgaaatgacttagcttttctttcttgtttaggcctaacaatttgcgatctatcggacgaacaaaatcgaaagtgtcttgtttt |
107 |
Q |
| |
|
||||||||| |||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||| ||| |
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| T |
3762825 |
gtcatgccagtagaatctaaaatggcttagtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcattt |
3762924 |
T |
|
| Q |
108 |
tctgatggagttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaag |
183 |
Q |
| |
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||||||| | | | ||||| ||||||||||| | ||||||||||||||||||||||||||||||| ||||| |
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| T |
3762925 |
tctgatgatgaagttgatgtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtttggaag |
3763000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 3771469 - 3771568
Alignment:
| Q |
12 |
tgccaatagaatctgaaatgacttagcttttctttcttgtttaggcctaacaatttgcgatctatcggacgaacaaaatcgaaagtgtcttgtttttctg |
111 |
Q |
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||||| |||||||||||||||||||| ||||| ||||| ||||| ||| |||||||| ||||| ||||||||||| || |||||||| | ||||||| |
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| T |
3771469 |
tgccagtagaatctgaaatgacttagtttttccttctt---taggcttaataatttgcggtctataggacgaacaaattcaaaagtgtcatcattttctg |
3771565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 3755711 - 3755796
Alignment:
| Q |
12 |
tgccaatagaatctgaaatgacttagcttttctttcttgtttaggcctaacaatttgcgatctatcggacgaacaaaatcgaaagtgtc |
100 |
Q |
| |
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||||| |||||||||||||||||||| ||||| ||| ||||||| ||| |||||||| ||||| ||||||||||| || |||||||| |
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| T |
3755711 |
tgccagtagaatctgaaatgacttagtttttc---cttctttaggcttaataatttgcggtctataggacgaacaaattcaaaagtgtc |
3755796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 3755837 - 3755885
Alignment:
| Q |
132 |
gtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttggg |
180 |
Q |
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||||||||||| | |||||||||||||||||||||| ||| ||||||| |
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| T |
3755837 |
gtgttgcaagaaagaagaaggaagaagaacaaagtgatgaagtgttggg |
3755885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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