View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_1D_low_23 (Length: 257)
Name: NF5659_1D_low_23
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_low_23 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 30271719 - 30271481
Alignment:
| Q |
19 |
cttctatattcttaaatcattaccggtgtttacgtgtcagtatcaggtcgtatttggtgtttgtgtctgtgtcagtgcttcgtagaccataagacaacat |
118 |
Q |
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| T |
30271719 |
cttctatattcttaaatcattactggtgtttacgtgtcagtatcaggtcgtatttggtgtttgtgtctgtgtcagtgcttcgtagaccataagacaacat |
30271620 |
T |
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| Q |
119 |
aatttaacaagggttgattaaaatattgatgannnnnnnaattgttttgcagaactcagcaaggctaactgttcctggaggaccaactgttgcatgtagc |
218 |
Q |
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| T |
30271619 |
aatttaacaagggttgattaaaatattgatgatttttttaattgttttgcagaactcagcaaggctaactgttcctggaggaccaactgttgcatgtagc |
30271520 |
T |
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| Q |
219 |
acagctaaggctgttgagtggtatgcttcttggtccaag |
257 |
Q |
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| T |
30271519 |
acagctaaggctgttgagtgggatgcttcttggtccaag |
30271481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 29360464 - 29360699
Alignment:
| Q |
23 |
tatattcttaaatcattaccggtgtttacgtgtcagtatcaggtcgtatttggtgtttgtgtctgtgtcagtgcttcgtagaccataagacaacataatt |
122 |
Q |
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| T |
29360464 |
tatattcttaaatcattactggtgtttacgtgtcggtatcagtttgtatttggtgtttgtgtttgtgttgatgcttcatagaccataagacaacataatt |
29360563 |
T |
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| Q |
123 |
taacaagggttgattaaaatattgatgannnnnnna-attgttttgcagaactcagcaaggctaactgttcctggaggaccaactgttgcatgtagcaca |
221 |
Q |
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| T |
29360564 |
taacaagggttaatacaaatattgatgttttttttatattgttttgcagaactcggcaaggctaactgttcctggaggaccaactgttgcatgtagcaca |
29360663 |
T |
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| Q |
222 |
gctaaggctgttgagtggtatgcttcttggtccaag |
257 |
Q |
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| T |
29360664 |
gcaaaagctgttgagtgggatgcttcttggtccaag |
29360699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 25964297 - 25964208
Alignment:
| Q |
164 |
tttgcagaactcagcaaggctaactgttcctggaggaccaactgttgcatgtagcacagctaaggctgttgagtggtatgcttcttggtc |
253 |
Q |
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| T |
25964297 |
tttgtagaactcagcaaggctaacagttcctggaggagctagtgttgcatgtagcacagagaaagctattgagtgggacgcttcttggtc |
25964208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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