View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5659_1D_low_25 (Length: 252)

Name: NF5659_1D_low_25
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5659_1D_low_25
NF5659_1D_low_25
[»] chr2 (8 HSPs)
chr2 (20-246)||(44686965-44687191)
chr2 (166-246)||(9684894-9684974)
chr2 (166-246)||(28225547-28225627)
chr2 (166-246)||(17345186-17345266)
chr2 (166-246)||(18744497-18744577)
chr2 (197-246)||(20142250-20142299)
chr2 (166-246)||(19161305-19161385)
chr2 (166-246)||(41867387-41867467)
[»] chr1 (3 HSPs)
chr1 (166-246)||(28040606-28040686)
chr1 (166-246)||(19035975-19036055)
chr1 (166-244)||(38732133-38732211)
[»] chr7 (5 HSPs)
chr7 (167-246)||(5827802-5827881)
chr7 (166-246)||(47679669-47679749)
chr7 (191-246)||(24528138-24528193)
chr7 (166-224)||(19277739-19277797)
chr7 (168-246)||(32585695-32585773)
[»] chr5 (3 HSPs)
chr5 (166-244)||(27337243-27337321)
chr5 (166-246)||(15291502-15291582)
chr5 (166-246)||(433840-433920)
[»] chr4 (4 HSPs)
chr4 (166-246)||(25707051-25707131)
chr4 (166-246)||(16958083-16958163)
chr4 (166-246)||(53171046-53171126)
chr4 (166-246)||(56461594-56461673)
[»] chr6 (6 HSPs)
chr6 (166-246)||(10402277-10402357)
chr6 (166-246)||(29337565-29337645)
chr6 (166-246)||(34305045-34305125)
chr6 (166-246)||(32120476-32120556)
chr6 (166-224)||(45169-45227)
chr6 (166-246)||(7200052-7200132)
[»] chr3 (5 HSPs)
chr3 (173-246)||(53786256-53786329)
chr3 (168-245)||(35236677-35236754)
chr3 (166-246)||(29862346-29862426)
chr3 (168-246)||(49018500-49018578)
chr3 (166-246)||(52411381-52411461)
[»] chr8 (4 HSPs)
chr8 (166-246)||(25021281-25021361)
chr8 (168-246)||(37517637-37517715)
chr8 (166-246)||(500775-500855)
chr8 (166-246)||(24125575-24125655)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 44687191 - 44686965
Alignment:
Q  20 tttatctttaatcttattattaacttaacgaaggtgttttgaattgcgttaagactcgatccacaaagagtccatgatccaaccaaataatcaacatcgt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  44687191 tttatctttaatcttattattaacttaacgaaggtgttttgaattgcgttaagactcgatccacaaagagtccatgatccaaccaaataatcaacaccgt 44687092  T
Q  120 atgaattaatcatatgatccacggaagaacaatgaattaatcctacggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgca 219  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44687091 atgaattaatcatatgatccacgaaagaacaataaattaatcctacggaagttaagtttgacataaacactagatagaaggcagtttttggatgtttgca 44686992  T
Q  220 agcaggacatgctcaagattttcttct 246  Q
    ||||| ||||||| |||||||||||||    
T  44686991 agcagcacatgcttaagattttcttct 44686965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 9684894 - 9684974
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||||| | ||| |||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  9684894 ggaagttaagtttgacatgaccacgagacagaaggcaatttttggatgtttgcaagcagcacatactcaagattttcttct 9684974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 28225627 - 28225547
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||| ||||||||| | ||||||||||||||| | ||||||||||||||||| || |||||||||||||||||||||    
T  28225627 ggaagttatgtttgacatgaccactagacagaaggcgggttttggatgtttgcaagaagcacatgctcaagattttcttct 28225547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 17345266 - 17345186
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||||| | ||| ||||| ||| || |||||||||||||||||| |  |||||||||||||||||||||    
T  17345266 ggaagttaagtttgacatgaccaccagacaaaagacaatttttggatgtttgcaagaaccacatgctcaagattttcttct 17345186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 18744497 - 18744577
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    ||||||||||||||| || | ||| |||||||||||| ||||||||||||||||||||  | |||||||||| ||||||||    
T  18744497 ggaagttaagtttgagatgaccacgagacagaaggcaatttttggatgtttgcaagcaccaaatgctcaagaatttcttct 18744577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 20142250 - 20142299
Alignment:
Q  197 aaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||| ||||||||||||||||||||| ||||||||| |||||||||||    
T  20142250 aaggcaatttttggatgtttgcaagcagcacatgctcaggattttcttct 20142299  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 19161305 - 19161385
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||||| | ||| ||||||||| ||  ||| |||||||||||||||  | ||||||| |||||||||||    
T  19161305 ggaagttaagtttgacatgatcacgagacagaagacaactttaggatgtttgcaagcaatatatgctcaggattttcttct 19161385  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 41867387 - 41867467
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||| ||||||||||| | |||  | ||||||||  |||||| |||||||||||||| |||||||||  ||||||||||    
T  41867387 ggaagtcaagtttgacatgaccacggggcagaaggcgatttttgaatgtttgcaagcagcacatgctcagaattttcttct 41867467  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 28040606 - 28040686
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||| ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  28040606 ggaaattaagtttgacatgaccacgagacagaaggcaatttttggatgtttgcaagcagaacatgctcaagattttcttct 28040686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 19036055 - 19035975
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||||| | ||| ||||| |||||| ||||||||||| ||||||||| ||||||||  |||||||||||    
T  19036055 ggaagttaagtttgacatgaccacgagacaaaaggcaatttttggatgtctgcaagcagcacatgctcgggattttcttct 19035975  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 38732211 - 38732133
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttctt 244  Q
    |||||||||||||||||| | ||||||||||||| || |||| ||||||||| |||||  | || |||| |||||||||    
T  38732211 ggaagttaagtttgacatgatcactagacagaagtcacttttaggatgtttgaaagcaacaaattctcatgattttctt 38732133  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 5827881 - 5827802
Alignment:
Q  167 gaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||||   ||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||    
T  5827881 gaagttaagtttgacatggccactagacagaaggcagttttaggatgtttgcaagcagcacatgctcaaaattttcttct 5827802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 47679749 - 47679669
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||||| | ||||||||||||| ||||||| ||||||||||||| || ||||||||| |||||||||||    
T  47679749 ggaagttaagtttgacatgaccactagacagaagacagttttaggatgtttgcaagtagcacatgctcaggattttcttct 47679669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 24528193 - 24528138
Alignment:
Q  191 agacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||| | ||||||||||||||||||  | ||||||| |||||||||||    
T  24528193 agacagaaggcaatatttggatgtttgcaagcataatatgctcaggattttcttct 24528138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 19277797 - 19277739
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcag 224  Q
    |||||| ||||||||||| | ||| || ||||||||  |||||||||||||||||||||    
T  19277797 ggaagtcaagtttgacatgaccacgaggcagaaggcgatttttggatgtttgcaagcag 19277739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 32585773 - 32585695
Alignment:
Q  168 aagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||| | ||||||||||||| ||  ||| |||||||||||| ||  | || |||| |||||||||||    
T  32585773 aagttaagtttgacatgaccactagacagaagacacctttaggatgtttgcaatcaacatattctcatgattttcttct 32585695  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 27337321 - 27337243
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttctt 244  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||  |||||||||||||||||||    
T  27337321 ggaagttaagtttgacatgaccactagacagaaggcagttttgggatgtttgcaaccaccacatgctcaagattttctt 27337243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 15291502 - 15291582
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||||| | ||| |||||||||||| |||| |||||||||||||||| ||||||||  |||||||||||    
T  15291502 ggaagttaagtttgacatgaccacgagacagaaggcaattttgggatgtttgcaagcagcacatgctcgggattttcttct 15291582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 433920 - 433840
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||| |||||||||| || | |||||| ||||||| |||||| |||||||||||||||  |||||||||||||||||||||    
T  433920 ggaacttaagtttgaaatgaccactaggcagaaggtagttttaggatgtttgcaagcaccacatgctcaagattttcttct 433840  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 25707131 - 25707051
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    ||||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||| ||||||| | |||||||||||    
T  25707131 ggaagttaagtttgacataattactagacagaaggaagttttaggatgtttgcaagcagcacatgctgaggattttcttct 25707051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 16958163 - 16958083
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    ||||||||||||||||||||  || |||||||||||| |||| |||| ||||||||||| |||||||| ||||||||||||    
T  16958163 ggaagttaagtttgacataactacgagacagaaggcaattttaggatatttgcaagcagcacatgctctagattttcttct 16958083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 53171126 - 53171046
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||||||| ||| ||| ||||  || ||||||||||||||||||||| ||||||||| |||||||||||    
T  53171126 ggaagttaagtttgacataaccacgagaaagaaaacaatttttggatgtttgcaagcagcacatgctcaggattttcttct 53171046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 56461594 - 56461673
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    ||||||||||||  |||| | |||||||||||||| |||||| |||||||||||| ||| |||||||||||||||| ||||    
T  56461594 ggaagttaagttc-acatgaccactagacagaaggaagttttaggatgtttgcaaacagcacatgctcaagatttttttct 56461673  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 10402357 - 10402277
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||||||| ||||| |  ||| ||||||||||||||||    
T  10402357 ggaagttaagtttgacatgaccactagacagaaggcagtgtttggatgttttcaagcggcgcatactcaagattttcttct 10402277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 29337565 - 29337645
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||||| | | ||||||||||||| ||||| || ||||||||||||| ||||||||| |||||||||||    
T  29337565 ggaagttaagtttgacatgacctctagacagaaggccgttttggggtgtttgcaagcagcacatgctcaggattttcttct 29337645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 34305125 - 34305045
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||||| | | | |||||||||| |||||||||||||||| |||||| |||||||||||||||| ||||    
T  34305125 ggaagttaagtttgacatgaccgcaagacagaaggaagtttttggatgtttggaagcagcacatgctcaagattttattct 34305045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 32120556 - 32120476
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||||| | ||| ||||||||| || || | ||||||||||||| |||||||||||| |||||||||||    
T  32120556 ggaagttaagtttgacatgaccacaagacagaagacaattataggatgtttgcaagtaggacatgctcatgattttcttct 32120476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 45169 - 45227
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcag 224  Q
    |||||||||||||||||| | |||  |||| |||| | |||||||||||||||||||||    
T  45169 ggaagttaagtttgacatgaccacgggacaaaaggtaatttttggatgtttgcaagcag 45227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 7200052 - 7200132
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||| |||||||| || | ||| |||||||| | |||| |||| |||| ||||| || ||||||||| |||||||||||    
T  7200052 ggaagtgaagtttgatatgaccacaagacagaaagtagttcttgggtgttggcaagaagaacatgctcaggattttcttct 7200132  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 53786329 - 53786256
Alignment:
Q  173 aagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    ||||||||||| | ||| ||||| |||||| ||||||||||||||||||||  |||||||||||||||||||||    
T  53786329 aagtttgacatgaccacgagacataaggcaatttttggatgtttgcaagcaccacatgctcaagattttcttct 53786256  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 35236754 - 35236677
Alignment:
Q  168 aagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttc 245  Q
    |||||||||||||||  | ||||||||||||| | ||||||||||||||||||| || | ||| ||||||||||||||    
T  35236754 aagttaagtttgacaggatcactagacagaagacggtttttggatgtttgcaagtagtatatgatcaagattttcttc 35236677  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 29862426 - 29862346
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||||| | |||| |||| || |||||||| |||||||||||| ||  ||||||||| |||||||||||    
T  29862426 ggaagttaagtttgacatgatcactcgacataatgcagttttaggatgtttgcaaacaacacatgctcatgattttcttct 29862346  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 49018578 - 49018500
Alignment:
Q  168 aagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||| | | ||| ||||| ||| || |||| |||||||||||||||| ||||||||| |||||||||||    
T  49018578 aagttaagtttgacgtgaccacgagacaaaagacaattttaggatgtttgcaagcagtacatgctcatgattttcttct 49018500  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 52411381 - 52411461
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||| ||| |||| |||||| ||| || |||| || |||||||| ||||  |||||||| |||||||||||    
T  52411381 ggaagttaagtttggcatgaacattagacaaaagacaattttagggtgtttgcatgcagcgcatgctcatgattttcttct 52411461  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 25021281 - 25021361
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    ||||||||||||||| || | ||||||||| ||||| | ||| || ||||||||||||| |||||||||||||||||||||    
T  25021281 ggaagttaagtttgatatgaccactagacataaggcggatttagggtgtttgcaagcagcacatgctcaagattttcttct 25021361  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 37517715 - 37517637
Alignment:
Q  168 aagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||| | ||| ||| |||||  | ||||||||||||||||||||| ||||||||| |||||||||||    
T  37517715 aagttaagtttgacatgaccacgagatagaagataatttttggatgtttgcaagcagcacatgctcatgattttcttct 37517637  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 500855 - 500775
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    ||||||||||||| |||||||||| | | ||||| || |||| |||| ||||||||||| | ||||||| |||||||||||    
T  500855 ggaagttaagtttaacataaacacgaaaaagaagacaattttaggatatttgcaagcagcatatgctcatgattttcttct 500775  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 24125655 - 24125575
Alignment:
Q  166 ggaagttaagtttgacataaacactagacagaaggcagtttttggatgtttgcaagcaggacatgctcaagattttcttct 246  Q
    |||||||||||||||||| |  || ||| || ||||| | || | |||||||||||||  ||||||||| |||||||||||    
T  24125655 ggaagttaagtttgacatgacaacgagataggaggcaatattagaatgtttgcaagcatcacatgctcaggattttcttct 24125575  T

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