View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_1D_low_26 (Length: 251)
Name: NF5659_1D_low_26
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 29525777 - 29525537
Alignment:
| Q |
1 |
gggattcatactgattcttaaaggagaatcaatgatggtgctctagatgtgtaaaagctcaattatatatctcagggatgtgggaaaacaattatctgaa |
100 |
Q |
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| T |
29525777 |
gggattcatagtgattcttaaaggagaatcaatgatggtgctctagatgtgtaaaaactcaattatatatctcagggatgtgggaaaacaattatctgaa |
29525678 |
T |
|
| Q |
101 |
ctttgttaacaatctctggtcttatctcttccctctgtttaaatgttccttataattcttattctgtaggaatttatagttttcttgtttactgttactg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
29525677 |
ttttgttaacaatctctggtcttatctcttccctctgtttaaatgttccttataattcttgttctgtaggaatttatagttttcttg-ttactgttactg |
29525579 |
T |
|
| Q |
201 |
tttataattctttatttccgccaaaaatgtcttttagaactc |
242 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29525578 |
tttataattctttatttctgccaaaaatgtcttttagaactc |
29525537 |
T |
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