View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_1D_low_29 (Length: 238)
Name: NF5659_1D_low_29
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_low_29 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 29525298 - 29525526
Alignment:
| Q |
10 |
attatacttgaagaaaattcagtaaatgttgtagcatcgtaaaggannnnnnnaatccatatatatggacaatggcaataacatcacaggaactcggaaa |
109 |
Q |
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| T |
29525298 |
attatacttgaagaaaattcagtaaatgttgtagcatcgtaaaggatttgtttaatccatatatatggacaatggcaataacatcacaggaactcggaaa |
29525397 |
T |
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| Q |
110 |
caatttcaacactgtacacccaacaccgtataaaataacaatttcaatgtgttcggattccgaggaacaaatgaattaatataaaatcagaaaccgtata |
209 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
29525398 |
caatttcaacactgtacacccaacaccgtatagaataacaatttcaatttgttcggattacgaggaaaaaatgaattaatataaaatcagaaaccgtata |
29525497 |
T |
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| Q |
210 |
gaatgtgcaagaaatacaatgtgtctgat |
238 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
29525498 |
gaatgtgcaagaaatacaatgtgtctgat |
29525526 |
T |
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