View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_1D_low_3 (Length: 489)
Name: NF5659_1D_low_3
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 27 - 285
Target Start/End: Original strand, 7087002 - 7087260
Alignment:
| Q |
27 |
tgaggtgttaaaggctaaccatgaagaaaacactcggcatacatcatctacctcacaagaagaaaaagggaagatgtcagtgtctgatccggttccaagt |
126 |
Q |
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| T |
7087002 |
tgaggtgttaaaggctaaccatgaagaaaacactcggcatacatcatctacctcacaagaagaaaaagggaagatgtcagtgtctgatccggttccaagt |
7087101 |
T |
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| Q |
127 |
gaagcggaaccaaagacgaagtcaccatcgaaaatcatccccgtgtcacaaccagagaatctttctaagcacacaaaaacaaaactagatgaggaaatat |
226 |
Q |
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| T |
7087102 |
gaaccggaaccaaagacgaagtcaccatcgaaaatcatccccgtgtcacaaccagagaatctttctaagcacacaaaaacaaaactagatgaggaaatat |
7087201 |
T |
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| Q |
227 |
caacatcaaaactaacaccaaagtcccatttggaaactcaaaggaagttccttcaacct |
285 |
Q |
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| T |
7087202 |
caacatcaaaactaacaccaaagtcccatttggaaactcaaaggaagttccttcaacct |
7087260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 96 - 285
Target Start/End: Original strand, 7666841 - 7667031
Alignment:
| Q |
96 |
gaagatgtcagtgtctgatccggttccaagtgaagcggaaccaaagacgaagtcaccatcgaaaatcatccccgtgtcacaaccagagaatctttctaag |
195 |
Q |
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| T |
7666841 |
gaagatgtcagtttctgatccaattccaagtgaagcggaaccaaagatgaagtctccgtcgaaaatcatccccgtgtcacaaccagagaatctttctaag |
7666940 |
T |
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| Q |
196 |
cacacaaaaacaaaactagatgaggaaatatcaacatcaaaactaacaccaaagtcccatttggaaactcaaaggaagtt-ccttcaacct |
285 |
Q |
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| T |
7666941 |
cacacaaagacaaaattagatgaggaaatatcaatctaaaaaataacatcaaagtcccctttggaaactcaaaggaagttaccttcaacct |
7667031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 351 - 466
Target Start/End: Original strand, 7087326 - 7087441
Alignment:
| Q |
351 |
tactagccaaccgaatcaacataccaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
450 |
Q |
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| T |
7087326 |
tactagccaaccgaatcaacataccaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
7087425 |
T |
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| Q |
451 |
tccacatcaaactcta |
466 |
Q |
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| T |
7087426 |
tccacatcaaactcta |
7087441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 351 - 466
Target Start/End: Original strand, 7667097 - 7667212
Alignment:
| Q |
351 |
tactagccaaccgaatcaacataccaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
450 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7667097 |
tactagccaaccgaatcaacatgcaaaagcatcttcttcaggtacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
7667196 |
T |
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| Q |
451 |
tccacatcaaactcta |
466 |
Q |
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| T |
7667197 |
tccacatcaaactcta |
7667212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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