View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_1D_low_32 (Length: 227)
Name: NF5659_1D_low_32
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 7086484 - 7086269
Alignment:
| Q |
1 |
tgagagaaggcctagatggtctttgaatgggaacatttgtgtctgaacgagtaattggttttgatgcgtctttcggacgacgagacattgattcaggtgt |
100 |
Q |
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| T |
7086484 |
tgagagaaggcctagatggtctttgaatgggaacatttgtgtctgaacgagtaattggttttgatgcgtctttcggacgacgagacattgattcaggtgt |
7086385 |
T |
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| Q |
101 |
tcctgatagccaggaagggattctaaaacgaaatgttggctttctttgtgccatggat----ggtttggttgatatttgaatacacaagaggatgttgtt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7086384 |
tcctgatagccaggaagggattctaaaacgaaatgttggctttctttgtgccatggatggttggtttggttgatatttgaatacacaagaggatgttgtt |
7086285 |
T |
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| Q |
197 |
tttcttttcctgatgt |
212 |
Q |
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|||||||||||||||| |
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| T |
7086284 |
tttcttttcctgatgt |
7086269 |
T |
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