View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5659_1D_low_34 (Length: 220)

Name: NF5659_1D_low_34
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5659_1D_low_34
NF5659_1D_low_34
[»] chr6 (2 HSPs)
chr6 (4-115)||(20142350-20142461)
chr6 (4-115)||(22190378-22190489)
[»] chr5 (2 HSPs)
chr5 (4-115)||(4696987-4697098)
chr5 (4-115)||(4971572-4971683)
[»] chr1 (3 HSPs)
chr1 (4-115)||(12748507-12748618)
chr1 (4-112)||(24683704-24683812)
chr1 (61-115)||(37022814-37022868)
[»] chr7 (1 HSPs)
chr7 (4-115)||(39490419-39490530)
[»] chr4 (1 HSPs)
chr4 (4-115)||(3411071-3411182)
[»] chr3 (3 HSPs)
chr3 (4-115)||(27971263-27971374)
chr3 (4-115)||(6885799-6885910)
chr3 (4-115)||(33984876-33984987)
[»] chr8 (2 HSPs)
chr8 (16-88)||(12827701-12827773)
chr8 (1-86)||(8097479-8097564)


Alignment Details
Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 20142461 - 20142350
Alignment:
Q  4 gaggcatccgcgactcatctaaataagtatcaagttccgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 103  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20142461 gaggcatccgcaactcatctaaataagtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 20142362  T
Q  104 cctaaccaagtt 115  Q
    ||||||||||||    
T  20142361 cctaaccaagtt 20142350  T

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Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 22190378 - 22190489
Alignment:
Q  4 gaggcatccgcgactcatctaaataagtatcaagttccgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 103  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22190378 gaggcatccgcaactcatctaaataagtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 22190477  T
Q  104 cctaaccaagtt 115  Q
    ||||||||||||    
T  22190478 cctaaccaagtt 22190489  T

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Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 4696987 - 4697098
Alignment:
Q  4 gaggcatccgcgactcatctaaataagtatcaagttccgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 103  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4696987 gaggcatccgcaactcatctaaataagtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 4697086  T
Q  104 cctaaccaagtt 115  Q
    ||||||||||||    
T  4697087 cctaaccaagtt 4697098  T

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Target: chr5; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 4971572 - 4971683
Alignment:
Q  4 gaggcatccgcgactcatctaaataagtatcaagttccgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 103  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4971572 gaggcatccgcaactcatctaaataagtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 4971671  T
Q  104 cctaaccaagtt 115  Q
    ||||||||||||    
T  4971672 cctaaccaagtt 4971683  T

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Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 12748618 - 12748507
Alignment:
Q  4 gaggcatccgcgactcatctaaataagtatcaagttccgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 103  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12748618 gaggcatccgcaactcatctaaataagtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 12748519  T
Q  104 cctaaccaagtt 115  Q
    ||||||||||||    
T  12748518 cctaaccaagtt 12748507  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 24683704 - 24683812
Alignment:
Q  4 gaggcatccgcgactcatctaaataagtatcaagttccgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 103  Q
    ||||||||||| || |||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||| || |    
T  24683704 gaggcatccgcaacacatctaaataagtatcaagttcagatttttcggtgttgttactcgattggctttcatattcttcaaattcctataaatcacccga 24683803  T
Q  104 cctaaccaa 112  Q
    |||||||||    
T  24683804 cctaaccaa 24683812  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 37022814 - 37022868
Alignment:
Q  61 ttgattggctttcatattcttcaaattcctacaaatcatccaacctaaccaagtt 115  Q
    ||||| |||| || |||||||||||||||||||||| |||||||| |||||||||    
T  37022814 ttgataggctgtcttattcttcaaattcctacaaatgatccaacccaaccaagtt 37022868  T

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Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 39490419 - 39490530
Alignment:
Q  4 gaggcatccgcgactcatctaaataagtatcaagttccgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 103  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39490419 gaggcatccgcaactcatctaaataagtatcaagttctgattttccggtgctgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 39490518  T
Q  104 cctaaccaagtt 115  Q
    ||||||||||||    
T  39490519 cctaaccaagtt 39490530  T

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Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 3411071 - 3411182
Alignment:
Q  4 gaggcatccgcgactcatctaaataagtatcaagttccgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 103  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3411071 gaggcatccacaactcatctaaataagtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 3411170  T
Q  104 cctaaccaagtt 115  Q
    ||||||||||||    
T  3411171 cctaaccaagtt 3411182  T

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Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 27971374 - 27971263
Alignment:
Q  4 gaggcatccgcgactcatctaaataagtatcaagttccgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 103  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27971374 gaggcatccgcaactcatctaaataagtatcaagttctgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 27971275  T
Q  104 cctaaccaagtt 115  Q
    | ||||||||||    
T  27971274 cataaccaagtt 27971263  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 6885799 - 6885910
Alignment:
Q  4 gaggcatccgcgactcatctaaataagtatcaagttccgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 103  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  6885799 gaggcatccgcaactcatctaaataagtatcaagttctgattttccggtgttgctacttgattggctttcatactcttcaaattcctacaaatcatccaa 6885898  T
Q  104 cctaaccaagtt 115  Q
    ||||||||||||    
T  6885899 cctaaccaagtt 6885910  T

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Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 33984987 - 33984876
Alignment:
Q  4 gaggcatccgcgactcatctaaataagtatcaagttccgattttccggtgttgttacttgattggctttcatattcttcaaattcctacaaatcatccaa 103  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33984987 gaggcatccgcaactcatctaaataagtatcaagttctgattttccgatgttattacttgattggctttcatattcttcaaattcctacaaatcatccaa 33984888  T
Q  104 cctaaccaagtt 115  Q
    ||||||||||||    
T  33984887 cctaaccaagtt 33984876  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 12827773 - 12827701
Alignment:
Q  16 actcatctaaataagtatcaagttccgattttccggtgttgttacttgattggctttcatattcttcaaattc 88  Q
    |||||||||||||||||||||||||  ||||| | |||||| |||||| ||| || ||| |||||||||||||    
T  12827773 actcatctaaataagtatcaagttcaaatttttcagtgttggtacttggttgactctcaaattcttcaaattc 12827701  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 8097479 - 8097564
Alignment:
Q  1 atggaggcatccgcgactcatctaaataagtatcaagttccgattttccggtgttgttacttgattggctttcatattcttcaaat 86  Q
    |||||||||||  | ||||||||||||||||||||||||   |||||  ||||||| |||||  |||||||| | |||||||||||    
T  8097479 atggaggcatctacaactcatctaaataagtatcaagttgatatttttgggtgttggtacttacttggcttttaaattcttcaaat 8097564  T

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