View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_1D_low_37 (Length: 215)
Name: NF5659_1D_low_37
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_low_37 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 10082714 - 10082924
Alignment:
| Q |
5 |
gttccaaaatgagataatgaagcatagaaagtgaattcaaattttataacatgacattcctagctcgggcgaatgattcgaacgtgattgaaactaactt |
104 |
Q |
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| T |
10082714 |
gttccaaaatgagataatgaaccatagaaagtgaattcaaattttataacatgacattccttgctcgggtgaatgattcgaacgtgattgaaactaactt |
10082813 |
T |
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| Q |
105 |
caaaataaaaaggtttgnnnnnnnnttacctgaccggtgtttccgttgacgaaaacgttactgcaattgaggtctctatgaatgatacaaggatcatgca |
204 |
Q |
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| T |
10082814 |
caaaataaaaaggtttgaaaaaaaattacctgaccggtgtttccgttgacaaaaacattactgcaattgaggtctctatgaatgatacaaggatcatgca |
10082913 |
T |
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| Q |
205 |
catgcaaataa |
215 |
Q |
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||||||||||| |
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| T |
10082914 |
catgcaaataa |
10082924 |
T |
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Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 22263637 - 22263722
Alignment:
| Q |
130 |
ttacctgaccggtgtttccgttgacgaaaacgttactgcaattgaggtctctatgaatgatacaaggatcatgcacatgcaaataa |
215 |
Q |
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| T |
22263637 |
ttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataa |
22263722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 22270203 - 22270118
Alignment:
| Q |
130 |
ttacctgaccggtgtttccgttgacgaaaacgttactgcaattgaggtctctatgaatgatacaaggatcatgcacatgcaaataa |
215 |
Q |
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| T |
22270203 |
ttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataa |
22270118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 45874241 - 45874291
Alignment:
| Q |
165 |
ctgcaattgaggtctctatgaatgatacaaggatcatgcacatgcaaataa |
215 |
Q |
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| T |
45874241 |
ctgcaattgagatctctatgaatgatacatggatcatgaacatgcaaataa |
45874291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 41245636 - 41245676
Alignment:
| Q |
162 |
ttactgcaattgaggtctctatgaatgatacaaggatcatg |
202 |
Q |
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| T |
41245636 |
ttactgcaattgagatctctatgaatgatgcaaggctcatg |
41245676 |
T |
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