View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_1D_low_42 (Length: 202)
Name: NF5659_1D_low_42
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 6e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 2619853 - 2620011
Alignment:
| Q |
1 |
gacacgacagaatttttaataagtgtacaatgcagctttgtgtgcacgattatttctttcatttcatttgttaaatctaaacaaagagaaggcaatttcc |
100 |
Q |
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| T |
2619853 |
gacacgacagaatttttaataagtgtacaatgcagctttgtgtgcacgattacttctttcatttcatttgttaaatctaaacaaagagaaggcaatttcc |
2619952 |
T |
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| Q |
101 |
aataatcaaattcaacatatacatggaatgagttgtagacatgggggatgtttacattg |
159 |
Q |
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| T |
2619953 |
aataatcaaatacaaaatatacatggaatgagttgtagacataggggatgcttacattg |
2620011 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 2616578 - 2616535
Alignment:
| Q |
155 |
cattgaattgaaattgaagctttgctttctttctttttgaataataaa |
202 |
Q |
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| T |
2616578 |
cattgaattgaaattgaagct----tttctttctttttgaataataaa |
2616535 |
T |
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