View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_1D_low_6 (Length: 434)
Name: NF5659_1D_low_6
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 1009175 - 1009019
Alignment:
| Q |
1 |
aataatcaataaaaagaaa-gctgaaatcactagctcagatgaatcaattagagacatttcatagcactatttgtgcgtgtactttctttttgtgctaaa |
99 |
Q |
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| T |
1009175 |
aataatcaataaaaataaaagctgaaatcactagctcagatgaatcaattaga--catttcatagcactatgagtgtgtgtactttctttttgtgctaaa |
1009078 |
T |
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| Q |
100 |
ttaaggaaagataggacatcctcaggatcctaaaatatttgagtgactatttgaaaagg |
158 |
Q |
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| T |
1009077 |
ataaggaaagacaggacatcctcaggatcctaaaatatttgagtgactatttggaaagg |
1009019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 297 - 428
Target Start/End: Complemental strand, 1008455 - 1008325
Alignment:
| Q |
297 |
ctgagattataaatgtgaaagaataatgcaacagaaagggttcaacaagtaacaacactgtaaagtgcaaaccctctattggaaccaatatggttttcgt |
396 |
Q |
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| T |
1008455 |
ctgagattataaatgtacaagaataatgcaacagaaaggattcaacaagtaacaacactgtaaagtgtaaaccctctattggaaccgatatggtttttgt |
1008356 |
T |
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| Q |
397 |
actctaattcctacactgaattaaatcatttc |
428 |
Q |
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| T |
1008355 |
agtctaa-tcctacgctgaattaaatcatttc |
1008325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 199 - 279
Target Start/End: Complemental strand, 1008949 - 1008869
Alignment:
| Q |
199 |
aatgttctatctctgattgggaacctttctccagagattgttcaatagtaaatagttgatattcggtaattaattatatcg |
279 |
Q |
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| T |
1008949 |
aatgttctatctctgattgggaacctttctccagagattgttcaatagtaagtagttgctattcagtaatttattatatcg |
1008869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 26980222 - 26980128
Alignment:
| Q |
171 |
gtttaatttctgttcaagtctgt---aactgaatgttctatctctgattgggaacctttctccagagattgttcaatagtaaatagttgatattc |
262 |
Q |
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|||| |||| ||||||||||||| || || |||||| |||| |||||||||||||||||||||| ||||||||||| |||||||||| ||||| |
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| T |
26980222 |
gtttcatttatgttcaagtctgtgataattgtatgttccatctatgattgggaacctttctccagaaattgttcaataataaatagttgttattc |
26980128 |
T |
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