View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_1D_low_7 (Length: 430)
Name: NF5659_1D_low_7
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 27 - 430
Target Start/End: Complemental strand, 30267248 - 30266837
Alignment:
| Q |
27 |
acaaacatcacactttttcctttcatcttcaacaaaaactcaactccattgaacctaccattacaaaacacca-----------tcattcaaattatact |
115 |
Q |
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| T |
30267248 |
acaaacatcacactttttcctttcatcttcaacaaaaactcaactccattgaacctgccattacaaaacaccacaaaaacaccatcattcaaattatact |
30267149 |
T |
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| Q |
116 |
aagcaaccacacactacattatcttaaaaacacaatattttgctatgaagcacaaacccaaacacgaacaccagacacgacattgacacttgagaaaatg |
215 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30267148 |
aagcaaccacacacta---tatcttaaaaacactatattttgctatgaagcacaaacccaaacacgaacaccagacacgacattgacacttgagaaaatg |
30267052 |
T |
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| Q |
216 |
aattattgaacataatcacgtgtcagacaccagacacatctttgatcagacgtgttaatgctacatatgcttttattattttttataccttgggagctca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30267051 |
aattattgaacataatcacgtgtcagacaccagacacatctttgatcagacgtgttaatgctacatatgcttttattattttttataccttgggagctca |
30266952 |
T |
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| Q |
316 |
caattgagtggtttccaacggtatttaaggtaatcagaatcaggacgaccattcatttgacaattaaattccgggtctataatttcacagctagaagatt |
415 |
Q |
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| T |
30266951 |
caattgagtggtttccaacggtatttaaggtaatcagaatcaggacgaccattcatttgacaattaaattctgggtctataatttcacagctagaagatt |
30266852 |
T |
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| Q |
416 |
gataaaaagggtaac |
430 |
Q |
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| T |
30266851 |
gataaaaagggtaac |
30266837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 29365338 - 29365395
Alignment:
| Q |
27 |
acaaacatcacactttttcctttcatcttcaacaaaaactcaactccattgaacctac |
84 |
Q |
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| T |
29365338 |
acaaacatcacattttttcctttcatcttcatcagaaactcaactccgttgaacctac |
29365395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 25959143 - 25959078
Alignment:
| Q |
301 |
taccttgggagctcacaattgagtggtttccaacggtatttaaggtaatcagaatcaggacgacca |
366 |
Q |
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| T |
25959143 |
taccttggaagctcacagttaagtggtctccatctatatctaaggtaatcagaatcaggacgacca |
25959078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 5660347 - 5660319
Alignment:
| Q |
237 |
gtcagacaccagacacatctttgatcaga |
265 |
Q |
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| T |
5660347 |
gtcagacaccagacacatctttgatcaga |
5660319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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