View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_1D_low_8 (Length: 403)
Name: NF5659_1D_low_8
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_low_8 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 24494991 - 24495375
Alignment:
| Q |
1 |
gcatgaagcacattgccatagatattcattttgtcagagatcatgtgagaaataaaaagattcgggttcaacatgtttccactaaagatcagctagcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| |
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| T |
24494991 |
gcatgaagcacattgccatagatattcattttgtcagagatcatgtgagaaataaaaagattcgggttcaacatgtttccactatagatcatctatcaga |
24495090 |
T |
|
| Q |
101 |
ttgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggtacccctatcttgcgggggcgtgttaaggtt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495091 |
ttgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggtacccctatcttgcgggggcgtgttaaggtt |
24495190 |
T |
|
| Q |
201 |
acaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgatt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24495191 |
acaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgatt |
24495290 |
T |
|
| Q |
301 |
agagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaat |
385 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495291 |
agagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaat |
24495375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 191 - 385
Target Start/End: Original strand, 24491623 - 24491817
Alignment:
| Q |
191 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacact |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24491623 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacact |
24491722 |
T |
|
| Q |
291 |
gtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaat |
385 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491723 |
gtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaat |
24491817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 238 - 383
Target Start/End: Original strand, 2810226 - 2810371
Alignment:
| Q |
238 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
337 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2810226 |
tattaagcattttagacgagagttattctgtgattaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctctaggaagcaattatt |
2810325 |
T |
|
| Q |
338 |
aggacagcaaatatgtttctatatattgtgccaatataccttgtga |
383 |
Q |
| |
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|||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
2810326 |
aggacaacaaatatgtttctatatattgtaccaatataccttgtga |
2810371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 2810031 - 2810071
Alignment:
| Q |
190 |
gtgttaaggttacaggaccaaggcttttaaattaagagata |
230 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |
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| T |
2810031 |
gtgttaaggttacaagaccaaggcttttaaattaagagata |
2810071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 18557001 - 18556618
Alignment:
| Q |
1 |
gcatgaagcacattgccatagatattcattttgtcagagatcatgtgagaaataaaaagattcgggttcaacatgtttccactaaagatcagctagcaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18557001 |
gcatgaagcacattgccatagatattcattttgtcagagatcatgtcagaaataaaaagattcgggttcaacatgtttccactaaagatcagctagcaga |
18556902 |
T |
|
| Q |
101 |
ttgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggtacccctatcttgcgggggcgtgttaaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18556901 |
ttgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatatgacggtacccctatcttgcgggggcgtgttaaggtt |
18556802 |
T |
|
| Q |
201 |
acaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgatt |
300 |
Q |
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|
|||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
18556801 |
acaggaccaaggcttttaaattaagagata-ttctagtattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactataattgact |
18556703 |
T |
|
| Q |
301 |
agagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaat |
385 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18556702 |
agagaaagtcaaaccatagctggaggaagcaattattaggacagcaaatatgtttctatatattgtaccaatataccttgtgaat |
18556618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 86456 - 86677
Alignment:
| Q |
1 |
gcatgaagcacattgccatagatattcattttgtcagagatcatgtgagaaataaaaagattcgggttcaacatgtttccactaaagatcagctagcaga |
100 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
86456 |
gcatgaagcatactgccatagatattcattttgttagagatcatgtcagaaataaaaagattcgggttcaacatgtttccactacagatcagctaacaga |
86555 |
T |
|
| Q |
101 |
ttgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggtacccctatcttgcgggggcgtgttaaggtt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
86556 |
ttgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggtacccctatcttgcaggggcgtgttaaggtt |
86655 |
T |
|
| Q |
201 |
acaggaccaaggcttttaaatt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
86656 |
acaggaccaaggcttttaaatt |
86677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 206 - 385
Target Start/End: Original strand, 86693 - 86876
Alignment:
| Q |
206 |
accaaggcttttaaattaagagatactag----tattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgatta |
301 |
Q |
| |
|
|||||||||||||||||||| |||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
86693 |
accaaggcttttaaattaagtgatattatattctagtattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgatta |
86792 |
T |
|
| Q |
302 |
gagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaat |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
86793 |
gagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaaaataccttgtgaat |
86876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 191 - 385
Target Start/End: Original strand, 24358936 - 24359130
Alignment:
| Q |
191 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacact |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24358936 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacact |
24359035 |
T |
|
| Q |
291 |
gtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaat |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24359036 |
gtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaat |
24359130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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