View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_2D_high_14 (Length: 359)
Name: NF5659_2D_high_14
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_high_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 33445946 - 33446289
Alignment:
| Q |
17 |
cactcttgagttggtcgagaaggttaatgactacatcatgactatgggtcctggagaagagaaggaatatttgagctgtgattctgtttgtaaatgcgat |
116 |
Q |
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| T |
33445946 |
cactcttgagttggtcgagaaggttaacgactacatcatggtcatgcttcctggagatgagaaggaatatttgagctgtgattctgtttgtaagtgtgat |
33446045 |
T |
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| Q |
117 |
gatgacataggggttgatcaccgatggatgacatcggagttcctgaatgaaataaaatgctctggtatgccaaatcatagattgatcttaaaggttggtg |
216 |
Q |
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| T |
33446046 |
gatgacataggggttgatcaccgttggatcactacggagttcttgaacgatatcaaatgctctggtatgccaaatcatagattgatcttgaaggttggtg |
33446145 |
T |
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| Q |
217 |
ctcctgttatgttgcttcgcaacgttgatcaatcagctggtctttgcaatggtacgcgtttaactgtcatttc-ttaggcaaaaatgtcatatgtgcgcg |
315 |
Q |
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| T |
33446146 |
ttcctgttatgttgcttcgcaacgttgatcaatcggctggtctgtgcaatggtacccgtttaactgtcatttcattgggcaaaaatgtcatatgtgcgcg |
33446245 |
T |
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| Q |
316 |
tattattggtggtttgcatgacggggaagttgcttacatacctc |
359 |
Q |
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| T |
33446246 |
tattattggtggtttgcatgatggcgaagttgcctacatacctc |
33446289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 46471170 - 46471429
Alignment:
| Q |
18 |
actcttgagttggtcgagaaggttaatgactacatcatgactatgggtcctggagaagagaaggaatatttgagctgtgattctgtttgtaaatgcgatg |
117 |
Q |
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| T |
46471170 |
actcttgagttggttgaaaaggttaatgattatgtgatggcaatgatacctggagatgaaaaggaatatttgagttgtgattcggtttgcaaatgcgacg |
46471269 |
T |
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| Q |
118 |
atgacataggggttgatcaccgatggatgacatcggagttcctgaatgaaataaaatgctctggtatgccaaatcatagattgatcttaaaggttggtgc |
217 |
Q |
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| T |
46471270 |
atgatataggtgttgatcatcgatggattacaactgatttcttgaatgacatcaagtgttcgggaatgccaaaccataggttatgtttgaaggttggagt |
46471369 |
T |
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| Q |
218 |
tcctgttatgttgcttcgcaacgttgatcaatcagctggtctttgcaatggtacgcgttt |
277 |
Q |
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| T |
46471370 |
tcctgtcatgttgcttcgcaacgttgatcaagcatctggtctctgcaatggaacacgttt |
46471429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 277
Target Start/End: Original strand, 3856327 - 3856397
Alignment:
| Q |
207 |
aaggttggtgctcctgttatgttgcttcgcaacgttgatcaatcagctggtctttgcaatggtacgcgttt |
277 |
Q |
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| T |
3856327 |
aaggttggagttcatgtcatgttgcttcgcaacgttgatcaagcatctggtctctgcaatggaacgcgttt |
3856397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 248
Target Start/End: Original strand, 18046223 - 18046376
Alignment:
| Q |
95 |
tgattctgtttgtaaatgcgatgatgacataggggttgatcaccgatggatgacatcggagttcctgaatgaaataaaatgctctggtatgccaaatcat |
194 |
Q |
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| T |
18046223 |
tgattcagtttgtaaatgtgacgacgactttggtcttgatcatcgttggattacaactgagtttttgaatgacattaaatgttcaggtatgccaaatcat |
18046322 |
T |
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| Q |
195 |
agattgatcttaaaggttggtgctcctgttatgttgcttcgcaacgttgatcaa |
248 |
Q |
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| T |
18046323 |
aggctcattctgaaggttggtgttcctattatgttgcttcggaatgttgatcaa |
18046376 |
T |
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