View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5659_2D_high_29 (Length: 201)
Name: NF5659_2D_high_29
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_high_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 42920591 - 42920421
Alignment:
| Q |
11 |
agaacctgtggaccaaaaaatcaaggtaaaaagcaaggtacaattaggctccagagacaacaaaaagtaactgtggggagacaaatcatgtccatgagat |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42920591 |
agaaccagtggaccaaaaaatcaaggtaaaaagcaaggtacaattaggctccagagacaacaaaaagtaactgtggggagacaaatcatgtccaggagat |
42920492 |
T |
|
| Q |
111 |
gaagatacacaatttgaaagtagaagaaacacatatcgactatggagacaaatctacttgcaccaaattca |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42920491 |
gaagatacacaatttgaaagtagaagaaacacatatcgactatggagacaaatctacttgcaccaaattca |
42920421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University