View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5659_2D_high_7 (Length: 519)

Name: NF5659_2D_high_7
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5659_2D_high_7
NF5659_2D_high_7
[»] chr8 (5 HSPs)
chr8 (226-500)||(10382503-10382775)
chr8 (247-499)||(9484308-9484558)
chr8 (9-224)||(10382813-10383020)
chr8 (328-375)||(9484854-9484902)
chr8 (328-375)||(10382158-10382206)
[»] chr4 (2 HSPs)
chr4 (328-449)||(52721113-52721234)
chr4 (469-500)||(52721083-52721114)
[»] chr3 (3 HSPs)
chr3 (396-450)||(46993711-46993765)
chr3 (248-366)||(41639026-41639141)
chr3 (328-366)||(46993441-46993479)
[»] chr5 (6 HSPs)
chr5 (328-384)||(3136044-3136101)
chr5 (258-375)||(25074914-25075029)
chr5 (258-375)||(25132883-25132998)
chr5 (328-366)||(3136427-3136465)
chr5 (328-375)||(25074404-25074452)
chr5 (328-375)||(25132373-25132421)
[»] chr6 (2 HSPs)
chr6 (260-375)||(2038652-2038765)
chr6 (329-382)||(1018687-1018741)
[»] chr1 (1 HSPs)
chr1 (262-319)||(43737787-43737844)
[»] chr2 (2 HSPs)
chr2 (260-300)||(9371014-9371054)
chr2 (262-318)||(14573319-14573374)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 226 - 500
Target Start/End: Complemental strand, 10382775 - 10382503
Alignment:
Q  226 tataaagcatttccactgtggaaaaatttaccttagccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnn 325  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||| |||||||||| | | ||||||||||||||| | |||| |||||||||||         
T  10382775 tataaagcatttctactatggaaaaatttaccttagtcattagatcaaatgaagaacacagttttatcgtacacttcc-aacattagattatttcttttt 10382677  T
Q  326 nncaccttcaaccacccttctctctccttcctccccaccacagcaacatcaaacaacctttaaaaatttcataagctgtaaaaattgatcttatacttct 425  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  10382676 t-caccttcaaccacccttctctctccttcctccccaccacagcaacatcaaacaacctttaaaaattccataagctgtaaaaattgatattatacttct 10382578  T
Q  426 tgattaaaaaatcaagagacccatctgatggtgattacatttaatttaatttgttaaactattacatgcttatgt 500  Q
    |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  10382577 tgattaaaaaatgaagagacccatatggtggtgattacatttaatttaatttgttaaactattacatgcttatgt 10382503  T

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Target: chr8; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 247 - 499
Target Start/End: Original strand, 9484308 - 9484558
Alignment:
Q  247 aaaaatttaccttagccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnnnncaccttcaaccacccttct 346  Q
    |||||||||| ||| |||||| ||||||||||||| | | ||||||| ||||||||| || |||||||||||||       |||||||||||||||||||    
T  9484308 aaaaatttactttaaccattaaattaaatgaagaacacagttttatcatacactttc-aatactagattatttctttttc-caccttcaaccacccttct 9484405  T
Q  347 ctctccttcctccccaccacagcaacatcaaacaacctttaaaaatttcataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagagacc 446  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9484406 ctctccttcctccccaccacagcaacatcaaacaacatgtaaaaattctataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagagacc 9484505  T
Q  447 catctgatggtgattacatttaatttaatttgttaaactattacatgcttatg 499  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9484506 catctggtggtgattacatttaatttaatttgttaaactattacatgcttatg 9484558  T

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Target: chr8; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 10383020 - 10382813
Alignment:
Q  9 tgggtagattattctgtgtgtgctctattattgtggaaaaggaaaagctatatggaatgtgggaatggtataggatgtttgatttgagaattttgcatat 108  Q
    |||||| |||||| ||||||||| ||||||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||||||    
T  10383020 tgggtatattattatgtgtgtgcgctattattgtggaaaaggaaaagatatatggaatg--------gtataggatgtttgatttgagaattttgcatat 10382929  T
Q  109 gatggtgtctaaaaagaaaagaattttggatatgatagtgtacatggatggatggctattatatgttctaccaaaaaagaatatttgcttagctcaattc 208  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10382928 gatgttgtctaaaaagaaaagaattttggatatgatagtgtacatggatggatggctattatatgttctaccaaaaaagaatatttgcttagctcaattc 10382829  T
Q  209 acaattctcatgctag 224  Q
    ||||||||||||||||    
T  10382828 acaattctcatgctag 10382813  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 9484902 - 9484854
Alignment:
Q  328 caccttcaaccacccttctctctccttcctccccacca-cagcaacatc 375  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  9484902 caccttccaccactcttctctctccttcctccccaccaccagcaacatc 9484854  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 10382158 - 10382206
Alignment:
Q  328 caccttcaaccacccttctctctccttcctccccacca-cagcaacatc 375  Q
    ||||||| ||||| |||||||||||||||||||||| | ||||||||||    
T  10382158 caccttccaccactcttctctctccttcctccccactaccagcaacatc 10382206  T

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Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 328 - 449
Target Start/End: Complemental strand, 52721234 - 52721113
Alignment:
Q  328 caccttcaaccacccttctctctccttcctccccaccacagcaacatcaaacaacctttaaaaatttcataagctgtaaaaattgatcttatacttcttg 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  52721234 caccttcaaccacccttctctctccttcctccccaccacagcaacatcaaacaacccgtaaaaattccataagctgtaaaaattgatcttatacttcttg 52721135  T
Q  428 attaaaaaatcaagagacccat 449  Q
    ||||||||||||||||||||||    
T  52721134 attaaaaaatcaagagacccat 52721113  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 52721114 - 52721083
Alignment:
Q  469 atttaatttgttaaactattacatgcttatgt 500  Q
    ||||||||||||||||||||||||||||||||    
T  52721114 atttaatttgttaaactattacatgcttatgt 52721083  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 396 - 450
Target Start/End: Original strand, 46993711 - 46993765
Alignment:
Q  396 ataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagagacccatc 450  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  46993711 ataagctgtaaaaattgatcttatccttcttgattaaaaaatcaagtgacccatc 46993765  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 366
Target Start/End: Complemental strand, 41639141 - 41639026
Alignment:
Q  248 aaaatttaccttagccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnnnncaccttcaaccacccttctc 347  Q
    ||||||||  |||||||||||||||| |  |||| | ||| |||| |||||||| ||||||||||||||||||       ||||||| ||||||||||||    
T  41639141 aaaatttattttagccattagattaatttgagaacacaatcttatggtacactt-ctaacactagattatttctttta--caccttccaccacccttctc 41639045  T
Q  348 tctccttcctccccaccac 366  Q
    |||||||||||||||||||    
T  41639044 tctccttcctccccaccac 41639026  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 366
Target Start/End: Original strand, 46993441 - 46993479
Alignment:
Q  328 caccttcaaccacccttctctctccttcctccccaccac 366  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  46993441 caccttccaccacccttttctctccttcctccccaccac 46993479  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 3136044 - 3136101
Alignment:
Q  328 caccttcaaccacccttctctctccttcctccccacca-cagcaacatcaaacaacct 384  Q
    ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||    
T  3136044 caccttccaccacccttctctctccttcctccccaccaccaccaacatcaaacaacct 3136101  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 258 - 375
Target Start/End: Complemental strand, 25075029 - 25074914
Alignment:
Q  258 ttagccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnnnncaccttcaaccacccttctctctccttcct 357  Q
    |||||||||||||||| ||||||| | |||  ||| |||||||||| ||||||||||||||||       ||||||| |||||| |||||||| ||||||    
T  25075029 ttagccattagattaattgaagaacacaatcatatggtacactttc-aacactagattatttc--ttttacaccttccaccaccattctctcttcttcct 25074933  T
Q  358 ccccacca-cagcaacatc 375  Q
    |||||||| ||||||||||    
T  25074932 ccccaccaccagcaacatc 25074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 258 - 375
Target Start/End: Complemental strand, 25132998 - 25132883
Alignment:
Q  258 ttagccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnnnncaccttcaaccacccttctctctccttcct 357  Q
    |||||||||||||||| ||||||| | |||  ||| |||||||||| ||||||||||||||||       ||||||| |||||| |||||||| ||||||    
T  25132998 ttagccattagattaattgaagaacacaatcatatggtacactttc-aacactagattatttc--ttttacaccttccaccaccattctctcttcttcct 25132902  T
Q  358 ccccacca-cagcaacatc 375  Q
    |||||||| ||||||||||    
T  25132901 ccccaccaccagcaacatc 25132883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 366
Target Start/End: Complemental strand, 3136465 - 3136427
Alignment:
Q  328 caccttcaaccacccttctctctccttcctccccaccac 366  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  3136465 caccttccaccacctttctctctccttcctccccaccac 3136427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 25074404 - 25074452
Alignment:
Q  328 caccttcaaccacccttctctctccttcctccccacca-cagcaacatc 375  Q
    ||||||| |||||| |||||||||||||||| |||||| ||||||||||    
T  25074404 caccttccaccaccattctctctccttcctctccaccatcagcaacatc 25074452  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 25132373 - 25132421
Alignment:
Q  328 caccttcaaccacccttctctctccttcctccccacca-cagcaacatc 375  Q
    ||||||| |||||| |||||||||||||||| |||||| ||||||||||    
T  25132373 caccttccaccaccattctctctccttcctctccaccatcagcaacatc 25132421  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 375
Target Start/End: Original strand, 2038652 - 2038765
Alignment:
Q  260 agccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnnnncaccttcaaccacccttctctctccttcctcc 359  Q
    |||||||||||||| ||||||||| |||  ||| ||||| |||| || |||||||||||||       ||||||| |||||| |||||||| ||||||||    
T  2038652 agccattagattaattgaagaatacaatcatatggtacattttc-aatactagattatttctttta--caccttccaccaccattctctcttcttcctcc 2038748  T
Q  360 ccacca-cagcaacatc 375  Q
    |||||| ||||||||||    
T  2038749 ccaccaccagcaacatc 2038765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 1018687 - 1018741
Alignment:
Q  329 accttcaaccacccttctctctccttcctccccaccac-agcaacatcaaacaac 382  Q
    |||||| ||||||||||||||||||||||| | || || ||||||||||||||||    
T  1018687 accttccaccacccttctctctccttcctcactactacaagcaacatcaaacaac 1018741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 43737787 - 43737844
Alignment:
Q  262 ccattagattaaatgaagaatataattttatcgtacactttctaacactagattattt 319  Q
    |||||||||||||||| ||||||| ||||||| ||| || || | |||||||||||||    
T  43737787 ccattagattaaatgaggaatatatttttatcatactctctcaaccactagattattt 43737844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 9371014 - 9371054
Alignment:
Q  260 agccattagattaaatgaagaatataattttatcgtacact 300  Q
    |||||||||||||||||||||| ||| ||||||| ||||||    
T  9371014 agccattagattaaatgaagaacatacttttatcatacact 9371054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 14573319 - 14573374
Alignment:
Q  262 ccattagattaaatgaagaatataattttatcgtacactttctaacactagattatt 318  Q
    |||||||||||||||| ||||||| ||||||| ||| || || ||||||||||||||    
T  14573319 ccattagattaaatgaggaatatatttttatcatactctctc-aacactagattatt 14573374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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