View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5659_2D_high_8 (Length: 508)
Name: NF5659_2D_high_8
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 22 - 491
Target Start/End: Original strand, 45068842 - 45069318
Alignment:
| Q |
22 |
actccacacgtaaaagtatgaagaatgaaaaatgggaattgattaaaaatgaataaaggattggatgattgattctgttcaatggttatcggttttgttt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45068842 |
actccacacgtaaaagtatgaagaatgaaaaatgggaattgattaaaaatgaataaaggagtggatgattgattctgttcaatggttatcggttttgttt |
45068941 |
T |
|
| Q |
122 |
gtcttttagtttcaactagtataagacatggatattaaggttgctttatgacaagaagtagctgtcagtttatgatttccatgagattgttataacttta |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45068942 |
gtcttttagtttcaactagtataagacatggatattaaggttgctttatgacaagaagtagctgtcagtttatgatttccatgagattgttataacttta |
45069041 |
T |
|
| Q |
222 |
tttaaaggttaatgataaggtttggattgtttttctcgtggaataggatgaacaggatagaaaacagtaaaaaagattagtacatttttggttctttctg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45069042 |
tttaaaggttaatgataaggtttggattgtttttctcgtggaataggatgaacaggatagaaaacagtaaaaaagattagtacatttttggttctttctg |
45069141 |
T |
|
| Q |
322 |
tgacatactcatgtgaacttgtttgagtgttactgttacttgtccacgctgctcatgcagatggttgagtatacaaaatattattaacgttttctttttt |
421 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45069142 |
tgacttactcatgtgaacttgtttgagtgttactattacttgtccacgctgctcatgcagatggttgagtatacaaaatattattaacgttttctttttt |
45069241 |
T |
|
| Q |
422 |
aagaaataaatattatactattgc-------agacaatctctactattattaacattgatgatgaattgatgactat |
491 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45069242 |
aagaaataaatattatactattgcacatgttagacaaactctactgttattaacattgatgatgaattgatgactat |
45069318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University