View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_2D_low_12 (Length: 603)
Name: NF5659_2D_low_12
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_low_12 |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 33713254 - 33712642
Alignment:
| Q |
1 |
tctactatctacgttgtccacatcagtaatatcagaagagccataattgttgaacttttgtgtttctctgagacatgtttgcatataaatgtcaagattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33713254 |
tctactatctacgttgtccacatcagtaatatcagaagagtcataattgttgaacttttgtgtttctctgagacatgtttgcatataaatgtcaagattg |
33713155 |
T |
|
| Q |
101 |
gaagcaacattacattatatgagtggtaggacaatggatc-attttgtgtaattggtctcaaaagtgg-----------------ttggaagagttgcat |
182 |
Q |
| |
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||| |||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33713154 |
gaaacaacattacattatatcagtggtaggacagtggatttattttgtgtaattggtctcaaaagtggaatgttagaacttcaggttggaagagttgcat |
33713055 |
T |
|
| Q |
183 |
ttaatttcaaaattattgatagaattggaaggtcctggttccatgtttgaatgccataaaaaatagttacaaacagtcccacattgaaggtgctgaaaca |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33713054 |
ttaatttcaaaattattgatagaattggaaggtcctggtgccatgtttgaatgccataaaaaatagttacaaacagtcccacattgaaggtgctgaaaca |
33712955 |
T |
|
| Q |
283 |
acaagaggaagatatacctatataaagatccttgtatacactgaaattaattaactcttttagggctgaataagtcacgttgttctgtccacttaattct |
382 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33712954 |
accagaggaagatatacctatataaagatccttgtatacactgaaattaattaactcttttagggcttaataagtcacgttgttctgtccacttaattct |
33712855 |
T |
|
| Q |
383 |
gttgtacattagtaataaattttggtgcaatgaatcttgaataggtccaacattgagagaaattgattttcaattaattttatatttttctattgttgag |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33712854 |
gttgtacattagtaataaattttggtgcaatgaatcttgaataggtccaacattgagagaaattgattttcaattaattttatatttttctattgttgag |
33712755 |
T |
|
| Q |
483 |
tcttttcaaaaatcaatgtattgaataaggagtccctaa-nnnnnnnngtttcttctttggacagaatcatagacaatatgatcatatttaacttcgcta |
581 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33712754 |
tcttttcaaaaatcaatgtattgaataaggagtccctaatttttttttgtttcttctttggacagaatcatagacaatatgatcatatttaacttcgct- |
33712656 |
T |
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| Q |
582 |
taaacaccaaactc |
595 |
Q |
| |
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||||||| |||||| |
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| T |
33712655 |
taaacactaaactc |
33712642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 21252120 - 21252284
Alignment:
| Q |
1 |
tctactatctacgttgtccacatcagtaatatcagaagagccataattgttgaacttttgtgtttctctgagacatgtttgcatataaatgtcaagattg |
100 |
Q |
| |
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|||||||||| ||||||| |||| ||||||||| |||||||| ||||||| |||||| |||||| |||||||||||||||||| |||||||||| || |
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| T |
21252120 |
tctactatcttcgttgtcgacataagtaatatcgtaagagccaaaattgttt--cttttgcgtttctgtgagacatgtttgcatatcaatgtcaagagtg |
21252217 |
T |
|
| Q |
101 |
gaagcaacattacattatatgagtggtaggacaatggatcattttgtgtaattggtctcaaaagtgg |
167 |
Q |
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||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
21252218 |
gaaacaacattacattatatcagtggtaggacagtggatcattttgtgtaattggtctcaacagtgg |
21252284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 4534 - 4700
Alignment:
| Q |
1 |
tctactatctacgttgtccacatcagtaatatcagaagagccataattgttgaacttttgtgtttctctgagacatgtttgcatataaatgtcaagattg |
100 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||| |||||| || | |||| ||||||||||||||||||||| ||| ||||||||| || |
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| T |
4534 |
tctactatcttcgctgtccacatcagtaatatcagaagagccaaaattgtcgatcctttgcgtttctctgagacatgtttgcgtatcaatgtcaagggtg |
4633 |
T |
|
| Q |
101 |
gaagcaacattacattatatgagtggtaggacaatggatcattttgtgtaattggtctcaaaagtgg |
167 |
Q |
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||| |||||||||| | ||| | |||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
4634 |
gaaacaacattacactttattactggtaggacaatggatcactttgtgtaattggtcttaaaagtgg |
4700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 63980 - 64017
Alignment:
| Q |
177 |
ttgcatttaatttcaaaattatt-gatagaattggaag |
213 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
63980 |
ttgcatttaatttcaaaattattcgatagaattggaag |
64017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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