View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_2D_low_14 (Length: 540)
Name: NF5659_2D_low_14
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 24998148 - 24998480
Alignment:
| Q |
1 |
ggtccttaactatggtttaaggaccatggttaaattgtttttcttgagggagcagcattacatggtggactctcagtgagattgaaaacaagaaagaaac |
100 |
Q |
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| T |
24998148 |
ggtccttaactatggttcaaggaccatggttaaattgtttttctcgagggagcagcattacatggtggactctcagtgagattgaaaacagaaaagaaac |
24998247 |
T |
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| Q |
101 |
gggtagggagggagattagtgtggtagataagggtgcgttcactgcacatacatgaaccggcgagactcaagcatgagaacaaatgacgcttacacaatg |
200 |
Q |
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| T |
24998248 |
gggtagggagggagattagtgtggtagataagggtgcattcactacacatacatgaaccggcgagactcaagcatgaaaacaaatgacgctcacgcaatg |
24998347 |
T |
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| Q |
201 |
gaaattggcatcaccgttgccctaaataattctg-----gnnnnnnnnnncttatgaatta--ttttgtgttgaaattttattgatttattcaatccagt |
293 |
Q |
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| T |
24998348 |
gaaattggcatcaccgttgccctcgaaaattctgttttttttttctttttcttatgaattattttttgtgttgaaattttattgatttattcaatccagt |
24998447 |
T |
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| Q |
294 |
tttcattatgattaatcgatttttgtcatgtct |
326 |
Q |
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| T |
24998448 |
tttcattatgattaatcaaattttgtcatgtct |
24998480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 363 - 523
Target Start/End: Original strand, 24998519 - 24998679
Alignment:
| Q |
363 |
caatgcaaatatggttagtgttataggttttacagtttaatgttctctgttagtatacaggggttatatacttttagtgatttggttgaagggcatgggg |
462 |
Q |
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| T |
24998519 |
caatgcaaatatggttagtgttataggttttacagtttaatgttctctgtcggtatccaggggctatatactcttagtgatttggttgaagggcatgggg |
24998618 |
T |
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| Q |
463 |
aacaatgaaggtaatgataagtttctctttaatttcactgttatatgagagtaattgatgt |
523 |
Q |
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| T |
24998619 |
aacaatgaaggtaatgataagtttctctttaatttcactgttatatgagagtaattgatgt |
24998679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 24998052 - 24998006
Alignment:
| Q |
113 |
agattagtgtggtagataagggtgcgttcactgcacatacatgaacc |
159 |
Q |
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| T |
24998052 |
agattagtgtggtggataagggtgcgctcactgtacatacatgaacc |
24998006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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