View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_2D_low_2 (Length: 1097)
Name: NF5659_2D_low_2
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 968; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 968; E-Value: 0
Query Start/End: Original strand, 93 - 1092
Target Start/End: Original strand, 21283642 - 21284641
Alignment:
| Q |
93 |
cagaaagggagatttgtggttgtggatgaagggtttgggttggaattggaggatttgttgagggcttcagcttatgtggtggggaagagtaggagtggga |
192 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21283642 |
cagaaggggagatttgtggtggtggatgaagggtttgggttggaattggaggatttgttgagggcttcagcttatgtggtggggaagagtaggagtggga |
21283741 |
T |
|
| Q |
193 |
ttgtttataaagttgttggtggagggaaagggtctgttccggcagcgacagtggcggttagacggttgagtgagggcgacgatggtggtttacggtttaa |
292 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21283742 |
ttgtttataaagttgttggtggagggaaagggtctgttccggcagcgacagtggcggttagacggttgagtgagggtgacgatggtggtttacggtttaa |
21283841 |
T |
|
| Q |
293 |
ggaatttgaggctgaggtggaggctattgggagactgagacaccctaatgttgtgcctttgagagcttattactatgctagtgatgagaaacttctcatc |
392 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21283842 |
ggaatttgaggctgaggtggaagctattgggagactgagacaccctaatgttgtgcctttgagagcttattactatgctagtgatgaaaaacttctcatc |
21283941 |
T |
|
| Q |
393 |
actgatttcattcgcaatggaagcttgcacactgctttgcatggtatcacttctcatactttttagttctttgtttaattagtctacattttgatttcta |
492 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21283942 |
actgatttcattcgcaatggaagcttgcacactgctttgcatggtatcgcttctcatactttttagttctttgtttaattagtctacattttgatttcta |
21284041 |
T |
|
| Q |
493 |
tgtgaaaatctatgactttactttgatcaaattgtataaatctatgattaatgcttaatttggatgtcaatgtttgtttttgattgcaaattcatgtagt |
592 |
Q |
| |
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| T |
21284042 |
tgtgaaaatctatgactttacattgatcaaattgtataaatctatgattaatgcttaatttggatgtcaatgtttgtttttgattgcaaattcatgtagt |
21284141 |
T |
|
| Q |
593 |
aaggaaatcacttttcaaatgctacatttagttttcttcttagttagtgtttggttccatagttgagaagaattgattttgtttattcccattaaactta |
692 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284142 |
aaggaaatcacttttcaaatgctacatttagttttcttcttagttagtgtttggttccatagttgagaagaattgattttgtttattcccattaaactta |
21284241 |
T |
|
| Q |
693 |
atcatagtgaaaacctatgtgtttggtcttcctcagacaaaccttagtttgactagatgttgtaatgtgataatgaataacttttggcttcatttgaaaa |
792 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284242 |
atcatagtgaaaacctatgtgtttggtcttcctcagacaaaccttagtttgactagatgttgtaatgtgataatgaataacttttggcttcatttgaaaa |
21284341 |
T |
|
| Q |
793 |
atctacactaatttacattctaagttaaaagagtaaaaatcatcaaaagtcactttacctcaaattctttttaaagaaacattacttttaaactcagctg |
892 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284342 |
atctacactaatttacattctaagttaaaagagtaaaaatcatcaaaagtcactttacctcaaattctttttaaagaaacattacttttaaactcagctg |
21284441 |
T |
|
| Q |
893 |
taaccaaatcaactgtacatcaaacacttagtagtacagtgtcacttgtgatttggttttggtatgagtaggtgacaaagtactattccttgtgagtgca |
992 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284442 |
taaccaaatcaactgtacatcaaacacttagtagtacagtgtcacttgtgatttggttttggtatgagtaggtgacaaagtactattccttgtgagtgca |
21284541 |
T |
|
| Q |
993 |
cattgttgtcactgtgtggttgagttcaaattcttgttttttacttttgagagctaatgatgttgccatgtgattgtggccatgatgatgatgtccatct |
1092 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21284542 |
cattgttgtcactgtgtggttgagttcaaattcttgttttttacttttgagagctaatgatgttgccatgtgattgtggccatgatgatgatgtgcatct |
21284641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1026 - 1072
Target Start/End: Original strand, 38064249 - 38064295
Alignment:
| Q |
1026 |
ttgttttttacttttgagagctaatgatgttgccatgtgattgtggc |
1072 |
Q |
| |
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||||||||| ||||||||||||||| |||||| |||||||||||||| |
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| T |
38064249 |
ttgttttttgcttttgagagctaataatgttgacatgtgattgtggc |
38064295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 662 - 706
Target Start/End: Complemental strand, 30598603 - 30598559
Alignment:
| Q |
662 |
gaattgattttgtttattcccattaaacttaatcatagtgaaaac |
706 |
Q |
| |
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|||||||||||| || ||||||||||||||||| ||||||||||| |
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| T |
30598603 |
gaattgattttggttgttcccattaaacttaattatagtgaaaac |
30598559 |
T |
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