View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_2D_low_22 (Length: 487)
Name: NF5659_2D_low_22
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_low_22 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 42 - 487
Target Start/End: Complemental strand, 34866194 - 34865749
Alignment:
| Q |
42 |
gatatatagttgaatgtgtctttcctctattcacagtaggggtttagtatcttatacagagttgaccattagtagcggttcatacactcgaaagattcca |
141 |
Q |
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| T |
34866194 |
gatatatagttgaacgtgtctttcctctattcacagtaggggtttagtatcgtatacagagttgaccattagtagcgggtcatacactcgaaagattcca |
34866095 |
T |
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| Q |
142 |
atataggaatttcaaattgttgcgtttttatatgcaggtgctcattaaccaactcaaagacattgcattaacaagtcagaagtccatatcagagtgtgca |
241 |
Q |
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| T |
34866094 |
atataggaatttcaaattgttgcgtttttatatgcaggtgctcattaaccaactcaaagacattgcattaacaagtcagaagtccatatcagagtgtgca |
34865995 |
T |
|
| Q |
242 |
gaaaaggggagctacttggcctccagacagacaatctttctgataaagaaatctttggaggctccttcaaataatgattcgtcaagttcagaaggtgatt |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
34865994 |
gaaaaggggagctacttggcctccagacagacaatctttctgataaagaaatctttggaggctccttcaaataacgattcgtcaagttctgaaggtgatt |
34865895 |
T |
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| Q |
342 |
aaagagtaagtaaatatttgatgctcctccnnnnnnngaataaaaatttgggatatttgttgatatgtttgtttacctccttatttgcatcgatagcagt |
441 |
Q |
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| T |
34865894 |
aaagagtaagtaaatatttgatgctcctcctttttttgaataaaaatttgggatatttgttgatatgtttgtttacctccttatttgcatcgatagcagt |
34865795 |
T |
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| Q |
442 |
atatttacattccatatcagtttttattgtattcaacgcatatgat |
487 |
Q |
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| T |
34865794 |
atatttacattccatatcagtttttattgtattcaacgtatatgat |
34865749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 266
Target Start/End: Complemental strand, 7948291 - 7948181
Alignment:
| Q |
157 |
attgttgcgttttt-atatgcaggtgctcattaaccaactcaaagacattgcattaacaagtcagaagtccatatcagagtgtgcagaaaaggggagcta |
255 |
Q |
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|||||||| ||||| || |||||||||| || ||||||||||||||| |||| ||||| |||||||||||||||||||||| ||||||| | || || |
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| T |
7948291 |
attgttgcctttttcatttgcaggtgcttatcaaccaactcaaagacgttgccccaacaattcagaagtccatatcagagtgtacagaaaaagtgaactg |
7948192 |
T |
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| Q |
256 |
cttggcctcca |
266 |
Q |
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| T |
7948191 |
cttggcctcca |
7948181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 51857703 - 51857783
Alignment:
| Q |
291 |
aatctttggaggctccttcaaataatgattcgtcaagttcagaaggtgattaaagagtaagtaaatatttgatgctcctcc |
371 |
Q |
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||||||||||||||||||||||||| || |||||||||| |||||||||||||||| |||||| || |||||| ||||| |
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| T |
51857703 |
aatctttggaggctccttcaaataacgaagtgtcaagttcacaaggtgattaaagagtgagtaaacatctgatgcccctcc |
51857783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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