View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_2D_low_24 (Length: 466)
Name: NF5659_2D_low_24
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_low_24 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 147959 - 148426
Alignment:
| Q |
1 |
tccagctctccagcgccatgtttttattatttccttatggttttaggtcttccaacaagtctaaaatgattcaattattttgaaaatcacacccaaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
147959 |
tccagctctccagcgccatgtttttattatttccttatggttttaggtcttccaacaagtctaaaatgattcaattattttgaaaatcacacccaaaata |
148058 |
T |
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| Q |
101 |
ttctctatttttaaggtccat--gaatcatgataatgtttagacagtcagtataatatttatattgatcacctttctcattaagggttaattgtgagaac |
198 |
Q |
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| T |
148059 |
ttctctatttttaaggtccatatgaatcatgataatgtttagacagtcagtataatatttatattgatcacctttctcattaagggttaattgtgagaac |
148158 |
T |
|
| Q |
199 |
ttgagtaaaaatgaaacattataacacaattaccttttcatgaatgtagttgttgatctctcccaaagctatcaaatgcaggccattataggaactacta |
298 |
Q |
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| T |
148159 |
ttgagtaaaaatgaaacattataacacaattaccttttcatgaatgtagttgttgatctctcccaaagctatcaaatgcaggccattataggaactacta |
148258 |
T |
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| Q |
299 |
cacacagcgaagcaacactggcaagtaaattcagtgacaccataaagaacattcctatcatatctctaacttcacctatgaaaaaaccagaattattatc |
398 |
Q |
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| T |
148259 |
cacacagcgaagcaacactggcaagtaaattcagtgacaccataaagaacattcctatcatatctctaacttcacctatgaacaaaccagaattattatc |
148358 |
T |
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| Q |
399 |
tcctagattgccacatttcatccaagtaggggatgatattaacctccacatgagatgtattgcagcaa |
466 |
Q |
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| T |
148359 |
tcctagattgccacatttcatccaagtaggggatgatattaacctccacatgagatgtattgcagcaa |
148426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 253 - 466
Target Start/End: Original strand, 139604 - 139817
Alignment:
| Q |
253 |
gatctctcccaaagctatcaaatgcaggccattataggaactactacacacagcgaagcaacactggcaagtaaattcagtgacaccataaagaacattc |
352 |
Q |
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| T |
139604 |
gatctctcacaaagaaaccaagtgcatgccatcataggaactatcacacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattc |
139703 |
T |
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| Q |
353 |
ctatcatatctctaacttcacctatgaaaaaaccagaattattatctcctagattgccacatttcatccaagtaggggatgatattaacctccacatgag |
452 |
Q |
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| T |
139704 |
caatcatgtctctaacttcattcgcagccaaaccagaattattatctccaagattgccacatttcattaaagtaggggatgatattaaccttcacatgca |
139803 |
T |
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| Q |
453 |
atgtattgcagcaa |
466 |
Q |
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| T |
139804 |
atgcattgcagcaa |
139817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 279 - 442
Target Start/End: Original strand, 24896952 - 24897115
Alignment:
| Q |
279 |
ggccattataggaactactacacacagcgaagcaacactggcaagtaaattcagtgacaccataaagaacattcctatcatatctctaacttcacctatg |
378 |
Q |
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||||||| ||||||| | |||||||| |||||||||| | || ||| || ||| |||| ||||||||||| ||||||| | |||||||||||| | |
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| T |
24896952 |
ggccattgtaggaacgattacacacaacgaagcaacaattgctagtgaactcaacgacaacataaagaacactcctatcttgtctctaacttcatttgct |
24897051 |
T |
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| Q |
379 |
aaaaaaccagaattattatctcctagattgccacatttcatccaagtaggggatgatattaacc |
442 |
Q |
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| T |
24897052 |
ggcagacaagaattattatctcctagattgccacatttcatccaattaggagatgatattaacc |
24897115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 442
Target Start/End: Original strand, 24909063 - 24909218
Alignment:
| Q |
287 |
taggaactactacacacagcgaagcaacactggcaagtaaattcagtgacaccataaagaacattcctatcatatctctaacttcacctatgaaaaaacc |
386 |
Q |
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| T |
24909063 |
taggaacgattacacacaacgaagcaacacttgctagtgaattcgacgacaacataaagaacactcctatcttgtctctaacttcatttgctggcagaca |
24909162 |
T |
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| Q |
387 |
agaattattatctcctagattgccacatttcatccaagtaggggatgatattaacc |
442 |
Q |
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| T |
24909163 |
agaattattatctcctagattgccacatttcatccaactcggagatgatattaacc |
24909218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 442
Target Start/End: Original strand, 24986566 - 24986721
Alignment:
| Q |
287 |
taggaactactacacacagcgaagcaacactggcaagtaaattcagtgacaccataaagaacattcctatcatatctctaacttcacctatgaaaaaacc |
386 |
Q |
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||||||| | |||||||| ||||||||||| || ||| ||||| |||| ||||||||||| ||||||| | |||||||||||| | | || |
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| T |
24986566 |
taggaacgattacacacaaagaagcaacacttgctagtgaattcgacgacaacataaagaacaatcctatcttgtctctaacttcatttgctggcagaca |
24986665 |
T |
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| Q |
387 |
agaattattatctcctagattgccacatttcatccaagtaggggatgatattaacc |
442 |
Q |
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| T |
24986666 |
agaattattatctcctagattgccacatttcatccaactcagagatgatattaacc |
24986721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 22770 - 22823
Alignment:
| Q |
389 |
aattattatctcctagattgccacatttcatccaagtaggggatgatattaacc |
442 |
Q |
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| T |
22770 |
aattattatctcctagattgccacatttcatccaactcagagatgatattaacc |
22823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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