View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5659_2D_low_26 (Length: 459)
Name: NF5659_2D_low_26
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 1494754 - 1494310
Alignment:
| Q |
1 |
ttgttatagcaatgacaaaggatccttcaaaggctgtgttgtcggatgcaaacaagttcactaggtttcttgaacttttatgagtaaacaaagattgatc |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1494754 |
ttgttatagcaatgacaaaggctctttcaaaggctgtgttgtcggatgcaaacaagttcactaggtttcttgaacttttatgagtaaacaaagattgatc |
1494655 |
T |
|
| Q |
101 |
agaagagagtagtccgattccttgctgaagattcttgtagtactggttatcaaatgtcctaggtgtaatcggatccatgtcaatggcaagtctagggtca |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1494654 |
agaagagagtagtccaattccttgctgaagattcttgtagtactggttatcaaatgtcctaggtgtaatcggatccatgtcaatggcaagtctagggtca |
1494555 |
T |
|
| Q |
201 |
acatcttttggacacacattttgtagctgttttgcatatccaatattaagtgatggatcaattaccttcccacttttgaagttgtaaattcgtttcgaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1494554 |
acatcttttggacacacattttgtagctgttttgcatatccaatattaagtgatggatcaattaccttcccacttttgaagttgtaaattcgtttcgaaa |
1494455 |
T |
|
| Q |
301 |
attggctgcagtgagagaatccaatagtatgcgctcctgcagccattcatttcagtttaaattattgaatatcaaaatcannnnnnnaatctgtaataag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1494454 |
attggctgcagtgagagaatccaatagtatgcgctcctgcagtcattcatttcagtttaaattattgaatatcaaaatcatttttttaatctgtaataag |
1494355 |
T |
|
| Q |
401 |
cgagccctaaataacgagtctcatactctcgagcgaacaagtttt |
445 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1494354 |
cgagccctaaataacaagtctcatactctcgagcgaacaagtttt |
1494310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University