View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5659_2D_low_29 (Length: 440)
Name: NF5659_2D_low_29
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_low_29 |
 | |
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| [»] scaffold0564 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
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Alignment Details
Target: scaffold0564 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Original strand, 10342 - 10764
Alignment:
| Q |
17 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaata |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10342 |
acatcattgttgtcatcgtataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataattaaaaataaatc |
10441 |
T |
|
| Q |
117 |
aattactgtgagaatatcttagtattgactgactg--tgtgacagaaccataggctagccggaacaattcacaatatcttagtatcataatagtcaaaca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10442 |
aattactgtgagaatatcttagtattgactgtgtgactgtgacagaaccataggctagccggaacaattcacaatatcttagtatcataatagtcaaaca |
10541 |
T |
|
| Q |
215 |
gaataataggagttaggagatacaatactgacttctctgcacatgtcatcatcacactatgttgtttaactattaacattgcattccagaactttgtaac |
314 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
10542 |
gaataataggagttaggagatacagtactgacttctctgcacatgtcatcatcacactatgctgtttaactattaacattgcattccagaaccttgt--- |
10638 |
T |
|
| Q |
315 |
aaacaagcttttattgaaggacatgagttttaacttacgttaatatcaaactaactgctacataaacttgatgtaac--agactaacagttaatatgctt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
10639 |
-aacaagcttttattgaaggacatgagtttcaacttacgttaatatcaaactaattgctacataaacttgat-aaacttaatgtaacagttaatatgctt |
10736 |
T |
|
| Q |
413 |
caattcaggaactatgtcatgaactccc |
440 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
10737 |
caattcaggaactatgccatgaactccc |
10764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 440
Target Start/End: Original strand, 39489554 - 39489974
Alignment:
| Q |
17 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaata |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39489554 |
acatcattgttgtcatcgtataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataattaaaaataaatc |
39489653 |
T |
|
| Q |
117 |
aattactgtgagaatatcttagtattgactgactg--tgtgacagaaccataggctagccggaacaattcacaatatcttagtatcataatagtcaaaca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39489654 |
aattactgtgagaatatcttagtattgactgtgtaactgtgacagaaccataggctagccggaacaattcacaatatcttagtatcataatagtcaaaca |
39489753 |
T |
|
| Q |
215 |
gaataataggagttaggagatacaatactgacttctctgcacatgtcatcatcacactatgttgtttaactattaacattgcattccagaactttgtaac |
314 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
39489754 |
gaataataggagttaggagatacagtactgacttctttgcacatgtcatcatcacactatgctgtttaactat--acattgcattccagaactttgt--- |
39489848 |
T |
|
| Q |
315 |
aaacaagcttttattgaaggacatgagttttaacttacgttaatatcaaactaactgctacataaacttgatgtaac--agactaacagttaatatgctt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
39489849 |
-aacaagcttttattgaaggacatgagtttcaacttacgttaatatcaaactaattgctacataaacttgat-aaacttaatgtaacagttaatatgctt |
39489946 |
T |
|
| Q |
413 |
caattcaggaactatgtcatgaactccc |
440 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
39489947 |
caattcaggaactatgccatgaactccc |
39489974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 440
Target Start/End: Complemental strand, 12749483 - 12749063
Alignment:
| Q |
17 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaata |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12749483 |
acatcattgttgtcatcgtataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataattaaaaataaatc |
12749384 |
T |
|
| Q |
117 |
aattactgtgagaatatcttagtattgactgactg--tgtgacagaaccataggctagccggaacaattcacaatatcttagtatcataatagtcaaaca |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12749383 |
aattactatgagaatatcttagtattgactgtgtgactgtgacagaaccataggctagccggaacaattcacaatatcttagtatcataatagtcaaaca |
12749284 |
T |
|
| Q |
215 |
gaataataggagttaggagatacaatactgacttctctgcacatgtcatcatcacactatgttgtttaactattaacattgcattccagaactttgtaac |
314 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
12749283 |
gaataataggagttaggagatacagtactgacttctttgcacatgtcatcatcacactatgctgtttaactat--acattgcattccagaactttgt--- |
12749189 |
T |
|
| Q |
315 |
aaacaagcttttattgaaggacatgagttttaacttacgttaatatcaaactaactgctacataaacttgatgtaac--agactaacagttaatatgctt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
12749188 |
-aacaagcttttattgaaggacatgagtttcaacttacgttaatatcaaactaattgctacataaacttgat-aaacttaatgtaacagttaatatgctt |
12749091 |
T |
|
| Q |
413 |
caattcaggaactatgtcatgaactccc |
440 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
12749090 |
caattcaggaactatgccatgaactccc |
12749063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 24682728 - 24682786
Alignment:
| Q |
17 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatataga |
75 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24682728 |
acatcatcgttgtcatcatataattctacaaattaagaaatttgattgttaaatataga |
24682786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 23828160 - 23828215
Alignment:
| Q |
17 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatataga |
75 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23828160 |
acatcattgttgtcatg---taattctacaaattaagaaatttgattgttaaatataga |
23828215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 43585571 - 43585612
Alignment:
| Q |
73 |
agagattaaaaaatcacttcagtattgataactaaaaataaa |
114 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
43585571 |
agagaataaaaaaccacttcagtattgatacctaaaaataaa |
43585612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 27972112 - 27971997
Alignment:
| Q |
17 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27972112 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaatc |
27972013 |
T |
|
| Q |
117 |
aattactgtgagaata |
132 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27972012 |
aattactgtgagaata |
27971997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 33985719 - 33985604
Alignment:
| Q |
17 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33985719 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaatc |
33985620 |
T |
|
| Q |
117 |
aattactgtgagaata |
132 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
33985619 |
aattagtgtgagaata |
33985604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 6884961 - 6885076
Alignment:
| Q |
17 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6884961 |
acatcattgttgtcatcatataattctacaaattacgaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaatt |
6885060 |
T |
|
| Q |
117 |
aattactgtgagaatat |
133 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
6885061 |
aatt-ctgtgagaatat |
6885076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 3410333 - 3410448
Alignment:
| Q |
17 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaata |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3410333 |
acatcattgttctcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaatc |
3410432 |
T |
|
| Q |
117 |
aattactgtgagaata |
132 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3410433 |
aattactgtgagaata |
3410448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 20143193 - 20143079
Alignment:
| Q |
17 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20143193 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaaccacttcagtattgataactaaaaataaatc |
20143094 |
T |
|
| Q |
117 |
aattactgtgagaat |
131 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20143093 |
aattactgtgagaat |
20143079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 22189646 - 22189760
Alignment:
| Q |
17 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22189646 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaaccacttcagtattgataactaaaaataaatc |
22189745 |
T |
|
| Q |
117 |
aattactgtgagaat |
131 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
22189746 |
aattactgtgagaat |
22189760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 26519441 - 26519326
Alignment:
| Q |
17 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26519441 |
acatcattgttgtcatcatataattctacaaattataaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaatc |
26519342 |
T |
|
| Q |
117 |
aattactgtgagaata |
132 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
26519341 |
aattaccgtgagaata |
26519326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 4696191 - 4696306
Alignment:
| Q |
17 |
acatcattgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4696191 |
acatcattgttgtcatcatataattctacaaattacgaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaatt |
4696290 |
T |
|
| Q |
117 |
aattactgtgagaatat |
133 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
4696291 |
aatt-ctgtgagaatat |
4696306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 4970743 - 4970852
Alignment:
| Q |
23 |
ttgttgtcatcatataattctacaaattacaaaatttgattgttaaatatagagattaaaaaatcacttcagtattgataactaaaaataaataaattac |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4970743 |
ttgttgtcatcatataattctacaaattacaaaatttgactgttaaatatagagattaaaaaaccacttcagtattgataactaaaaataaatcaattac |
4970842 |
T |
|
| Q |
123 |
tgtgagaata |
132 |
Q |
| |
|
|||||||||| |
|
|
| T |
4970843 |
tgtgagaata |
4970852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 8097155 - 8097203
Alignment:
| Q |
21 |
cattgttgtcatcatataattctacaaattacaaaatttgattgttaaa |
69 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||||||| |||||||| |
|
|
| T |
8097155 |
cattgttgtcatcatctaattctacaaaataagaaatttggttgttaaa |
8097203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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