View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5659_2D_low_31 (Length: 366)
Name: NF5659_2D_low_31
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 22)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 30337487 - 30337138
Alignment:
| Q |
1 |
tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337487 |
tccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac |
30337388 |
T |
|
| Q |
101 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg |
200 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337387 |
ttgttcttacgttcagcaatattatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg |
30337288 |
T |
|
| Q |
201 |
taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337287 |
taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
30337188 |
T |
|
| Q |
301 |
gagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30337187 |
gagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgt |
30337138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 30061516 - 30061865
Alignment:
| Q |
1 |
tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30061516 |
tccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctgggatttccctaagagtgccacccatctgtagagaaaac |
30061615 |
T |
|
| Q |
101 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30061616 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctctttgaacctgttaccaatctcatggcgaaacatgatgttctttggtttgaaagagg |
30061715 |
T |
|
| Q |
201 |
taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30061716 |
taaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacaccatctttgaggtcttgtaaccatagcttaataga |
30061815 |
T |
|
| Q |
301 |
gagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30061816 |
gagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgt |
30061865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 30750790 - 30751138
Alignment:
| Q |
1 |
tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30750790 |
tccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac |
30750889 |
T |
|
| Q |
101 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30750890 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccaatctcatggcgaaacatgatgttctttggtttgaaagagg |
30750989 |
T |
|
| Q |
201 |
taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
300 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30750990 |
tacatcctctcagtcgacaagacttaatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
30751089 |
T |
|
| Q |
301 |
gagttctttgaattgtttcttctcagcatcttcaagaatagccttgatg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30751090 |
gagttctttgaattgtttcttctcagcatcttcaagaacagccttgatg |
30751138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 29 - 350
Target Start/End: Complemental strand, 30712362 - 30712041
Alignment:
| Q |
29 |
gagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatcta |
128 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30712362 |
gagctggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatcta |
30712263 |
T |
|
| Q |
129 |
acctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgat |
228 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30712262 |
acctccttgtaatctctttgaacctgttaccaatctcatggcgaaacatgatgttctttagtttgaaagaggtaaatcctctcagtcgaaaagactcgat |
30712163 |
T |
|
| Q |
229 |
cgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagca |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30712162 |
cgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagca |
30712063 |
T |
|
| Q |
329 |
tcttcaagaatagccttgatgt |
350 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
30712062 |
tcttcaagaacagccttgatgt |
30712041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 29 - 350
Target Start/End: Original strand, 30484573 - 30484894
Alignment:
| Q |
29 |
gagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatcta |
128 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30484573 |
gagctggtttggcgcccttcagctacttgatctgggattaccctaagagtttcacccgtctgtagagaaaacttgttctttctttcagcaatatcatcta |
30484672 |
T |
|
| Q |
129 |
acctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgat |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30484673 |
acctccttgtaatctctttcaacctgttaccaatctcatggcgaaacatgatgttctttggtttgaaagaggtaaatcctctgagtcgacaagactcgat |
30484772 |
T |
|
| Q |
229 |
cgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagca |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30484773 |
cgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagca |
30484872 |
T |
|
| Q |
329 |
tcttcaagaatagccttgatgt |
350 |
Q |
| |
|
|||||||||| ||| ||||||| |
|
|
| T |
30484873 |
tcttcaagaacagctttgatgt |
30484894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 30676250 - 30675901
Alignment:
| Q |
1 |
tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30676250 |
tccaaacacttttgattcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac |
30676151 |
T |
|
| Q |
101 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
30676150 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttgccgatctcactgcgaaacatgatgttctttggtttgagagagg |
30676051 |
T |
|
| Q |
201 |
taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
300 |
Q |
| |
|
||||||| ||| ||| ||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30676050 |
atgatcctctaagttgaccagacttgattgaatactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
30675951 |
T |
|
| Q |
301 |
gagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30675950 |
gagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgt |
30675901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 29854455 - 29854802
Alignment:
| Q |
1 |
tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||| |||| ||||||||||| || || | ||||| ||| | | |||| | ||||| ||||| |
|
|
| T |
29854455 |
tccaaacacttttggttcagcaataatggagctggtttgacgccattcagctacttcatttgagctttccttaacaatagtaccctcccgtagaaaaaac |
29854554 |
T |
|
| Q |
101 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg |
200 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29854555 |
ttgttcttactatcagcaatatcatccaatttccttgtaatctctttcaacctgttgccgatctcatggcgaaacatgatgttctttggtttgaaagagg |
29854654 |
T |
|
| Q |
201 |
taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
300 |
Q |
| |
|
| |||||||| ||| ||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||| |
|
|
| T |
29854655 |
ttaatcctctaagttgaccagacttgattgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccataccttaataga |
29854754 |
T |
|
| Q |
301 |
gagttctttgaattgtttcttctcagcatcttcaagaatagccttgat |
348 |
Q |
| |
|
| | ||| ||| ||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
29854755 |
gtggtctgtgacttgtttcttttcagcatcttcaagaacagcattgat |
29854802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 29873318 - 29873665
Alignment:
| Q |
1 |
tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac |
100 |
Q |
| |
|
|||||| |||||||||||| ||||||| |||| |||||| |||| ||||||||||| || || | ||||| ||| | | |||| | ||||| ||||| |
|
|
| T |
29873318 |
tccaaatacttttggttcaacaataatggagctggtttgacgccattcagctacttcatttgagctttccttaacaatagtaccctcccgtagaaaaaac |
29873417 |
T |
|
| Q |
101 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg |
200 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||||| |||||| |
|
|
| T |
29873418 |
ttgttcttactatcagcaatatcatccaatctccttgtaatctctttcaacctgttgccgatctcaaggcgaaacatgatgttatttggtttaaaagaga |
29873517 |
T |
|
| Q |
201 |
taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
300 |
Q |
| |
|
| ||||||| ||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||||| ||||| ||||||||| |
|
|
| T |
29873518 |
ttgatcctctaagttgaccagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgtagccataccttaataga |
29873617 |
T |
|
| Q |
301 |
gagttctttgaattgtttcttctcagcatcttcaagaatagccttgat |
348 |
Q |
| |
|
| | ||| ||| ||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
29873618 |
gcggtctgtgacttgtttcttttcagcatcttcaagaacagccttgat |
29873665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 29 - 351
Target Start/End: Original strand, 30436985 - 30437292
Alignment:
| Q |
29 |
gagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatcta |
128 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||| | || ||||||||||||||||||| |||||||||| ||| | |
|
|
| T |
30436985 |
gagctggtttggcgcccttcagcagcttgatctgggctttccctaagagttacacccgtatggagagaaaacttgttcttacgttcagcaatacgatcca |
30437084 |
T |
|
| Q |
129 |
acctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgat |
228 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||| || ||||| || ||| ||||||||||| ||||| ||| |
|
|
| T |
30437085 |
acctccctgtaatctctttcaacctgttaccgatcttatggcgaaac---------------tttaaagatgtgaattttctcagtcgactagacttgat |
30437169 |
T |
|
| Q |
229 |
cgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagca |
328 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| || ||||||| |||| |||| |||||| |
|
|
| T |
30437170 |
cgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtagccataccttaatgaagttgtctttgacttgtctcttttcagca |
30437269 |
T |
|
| Q |
329 |
tcttcaagaatagccttgatgtc |
351 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
30437270 |
tcttcaagaacagccttgatgtc |
30437292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 30401218 - 30401570
Alignment:
| Q |
1 |
tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccac--ccatct-gtagagaa |
97 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||| | |||| |||| |||| |||||| ||||| | ||||||||| | | || |||||| ||||| | |
|
|
| T |
30401218 |
tccaaacacttctggtttagcaataatggagttgatttgacgccattcatctacttcatctgagctttccctaacatatacagtaccatctcgtagaaga |
30401317 |
T |
|
| Q |
98 |
aacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaag |
197 |
Q |
| |
|
|| ||||||||| | |||||||||||||| || || ||||||||||||||||||||||| ||||||| | |||||||| |||||||||||| ||||||| |
|
|
| T |
30401318 |
aatttgttcttaatatcagcaatatcatccaatcttcttgtaatctctttcaacctgttgccgatctgacggcgaaacacgatgttctttgggttgaaag |
30401417 |
T |
|
| Q |
198 |
aggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaat |
297 |
Q |
| |
|
|| | |||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||| |||||| |
|
|
| T |
30401418 |
agaatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttggagccataccttaat |
30401517 |
T |
|
| Q |
298 |
agagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgt |
350 |
Q |
| |
|
| || ||||||| |||| |||||||||||||| |||||| ||||| ||||| |
|
|
| T |
30401518 |
atagctgtctttgacttgtctcttctcagcatctacaagaacagcctcgatgt |
30401570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 30241343 - 30241018
Alignment:
| Q |
1 |
tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttcca---cccatctgtagagaa |
97 |
Q |
| |
|
|||||||||||||||||||| |||||| | || |||||| |||| ||||||||| | || |||| |||||| || ||||||| || ||| ||| || |
|
|
| T |
30241343 |
tccaaacacttttggttcagtaataatagcgctggtttgacgccattcagctacgtcatttgggctttcccgaacagttccagtaccttcctgcagaaaa |
30241244 |
T |
|
| Q |
98 |
aacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaag |
197 |
Q |
| |
|
||||| ||| | || |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
30241243 |
aacttcttcctcctatcagcaatatcatccaacctcccgttaatctcttccaacctgttaccgatctcatggcgaaacttgag---------------ag |
30241159 |
T |
|
| Q |
198 |
aggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaat |
297 |
Q |
| |
|
|||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||| | ||||| |||||| |
|
|
| T |
30241158 |
aggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaat |
30241059 |
T |
|
| Q |
298 |
agagagttctttgaattgtttcttctcagcatcttcaagaa |
338 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
30241058 |
agagcagtctgtgacttgtttcttctcagcatcttcaagaa |
30241018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 97 - 347
Target Start/End: Original strand, 30207762 - 30208012
Alignment:
| Q |
97 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa |
196 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || || |||||| | | ||| |||||||||||||||||||| |
|
|
| T |
30207762 |
aaacttgtttttactttcagcaatatcatctaacctccttgtaatctctttcaatcttttgccaatctcacgacaaaaaatgatgttctttggtttgaaa |
30207861 |
T |
|
| Q |
197 |
gaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa |
296 |
Q |
| |
|
|| | | | | |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||| | |
|
|
| T |
30207862 |
gatgatgaggcaataagtcgagcagactcgatcgagcactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccataccttta |
30207961 |
T |
|
| Q |
297 |
tagagagttctttgaattgtttcttctcagcatcttcaagaatagccttga |
347 |
Q |
| |
|
||||| | | ||| ||| |||| ||||||||||||||||| ||| |||| |
|
|
| T |
30207962 |
tagagcgattgatgacttgcttctgctcagcatcttcaagaacagcgttga |
30208012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 122 - 348
Target Start/End: Complemental strand, 17417509 - 17417283
Alignment:
| Q |
122 |
tcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaag |
221 |
Q |
| |
|
||||| || |||||||||||||||| |||||| | ||||||||| ||||||| |||||||||||||||||||| ||| | ||||| || |||| || |
|
|
| T |
17417509 |
tcatcaaatctccttgtaatctcttccaacctttggccgatctcacggcgaaatatgatgttctttggtttgaaataggatgagcctctaagccgaccag |
17417410 |
T |
|
| Q |
222 |
actcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttctt |
321 |
Q |
| |
|
||||||| ||| |||||||||| |||||||| |||||||||||| |||||||||| | ||| | ||||| ||| ||||| | ||| ||| |||||| | |
|
|
| T |
17417409 |
actcgattgagcactcatcaagaatatcatctagcacataaacaacatctttgagttgttgaagccataccttgttagagcgatctgtgacttgtttatg |
17417310 |
T |
|
| Q |
322 |
ctcagcatcttcaagaatagccttgat |
348 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
17417309 |
ctcagcatcttcaagaacagccttgat |
17417283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 30476519 - 30476866
Alignment:
| Q |
1 |
tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatct-gtagagaaaa |
99 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| |||||||||| |||||| |||| || ||| ||||||||| | ||||| ||| ||| | ||| |
|
|
| T |
30476519 |
tccaaacactttgggttcagcaataatggagcttgtttggcgccattcagcaacttcatttggcctttccctaacaacgacaccc-tctcgtaaaagaaa |
30476617 |
T |
|
| Q |
100 |
cttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagag |
199 |
Q |
| |
|
||||| |||||||||||||| | ||| || ||||||||||| ||||||||||| || ||||| ||| |||||||| ||||||||| | |||||| || |
|
|
| T |
30476618 |
cttgtctttactttcagcaatttgatcgaatctccttgtaatttctttcaaccttttgccgatgtcacggcgaaacacaatgttctttaggttgaaacag |
30476717 |
T |
|
| Q |
200 |
gtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatag |
299 |
Q |
| |
|
| | || | |||| || ||| || || || | |||||||| |||||||| |||||||| |||||||||||||| | ||| | ||||| |||||||| |
|
|
| T |
30476718 |
gacgaggctttaagtctactagattcaatggaacattcatcaagaatatcatcaagcacatatacagcatctttgagttgttggagccataccttaatag |
30476817 |
T |
|
| Q |
300 |
agagttctttgaattgtttcttctcagcatcttcaagaatagccttgat |
348 |
Q |
| |
|
|| | ||| ||| ||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
30476818 |
agcggtctgtgacctgtttctgctcagcatcttcaagaacagccttgat |
30476866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 348
Target Start/End: Complemental strand, 30329791 - 30329456
Alignment:
| Q |
10 |
ttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccaccca-tctgtagagaaaacttgttctt |
108 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| | ||||||||||| || ||| |||||||||| || |||| ||| |||| ||| |||||||| |
|
|
| T |
30329791 |
ttttggttcagcaataacaaagctggtttggcgtcattcagctacttcatgtggcctttccctaagtcatctaccctctct-tagatgaaatttgttctt |
30329693 |
T |
|
| Q |
109 |
actttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcct |
208 |
Q |
| |
|
| |||||||||| | |||||| || || ||||| ||||||||||| || ||||||||||||||| |||||||||||||||||||||| | ||| |
|
|
| T |
30329692 |
attttcagcaatcttatctaatcttctggtaatttctttcaacctatt---gatctcatggcgaaatacaatgttctttggtttgaaagaggatgagcct |
30329596 |
T |
|
| Q |
209 |
ctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctt |
308 |
Q |
| |
|
|| | ||||| |||||||||| || ||||||||||||||||||| |||||||| | | ||||||||| | ||| | ||||| |||||||||| | ||| |
|
|
| T |
30329595 |
ctaattcgaccagactcgatcaagcactcatcaaggatatcatcaagcacatatatatcatctttgatttgttgaagccatatcttaatagagcggtctg |
30329496 |
T |
|
| Q |
309 |
tgaattgtttcttctcagcatcttcaagaatagccttgat |
348 |
Q |
| |
|
|| ||| || | |||| |||||||||||| | ||||||| |
|
|
| T |
30329495 |
agacttgcttatgctcaacatcttcaagaacaaccttgat |
30329456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 16415393 - 16415432
Alignment:
| Q |
309 |
tgaattgtttcttctcagcatcttcaagaatagccttgat |
348 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
16415393 |
tgaattgtttctcctcagcatcttcaagagtagccttgat |
16415432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 29608394 - 29608335
Alignment:
| Q |
97 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgtt |
156 |
Q |
| |
|
|||||| |||||||||||| ||| | ||| || |||||||||||||||||||||||||| |
|
|
| T |
29608394 |
aaactttttcttactttcaaaaatttgatcaaatctccttgtaatctctttcaacctgtt |
29608335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 30520322 - 30520240
Alignment:
| Q |
266 |
gcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgat |
348 |
Q |
| |
|
||||||||||| | ||| | ||||| ||| |||||| | ||| | | |||||||||||||||||||||||||| |||||||| |
|
|
| T |
30520322 |
gcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacggccttgat |
30520240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 30520491 - 30520401
Alignment:
| Q |
97 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttcttt |
187 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || ||||||| ||||| ||||| | || || | |||||||||| |||| |||||| |
|
|
| T |
30520491 |
aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattcttt |
30520401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 30560662 - 30560580
Alignment:
| Q |
266 |
gcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgat |
348 |
Q |
| |
|
||||||||||| | ||| | ||||| ||| |||||| | ||| | | |||||||||||||||||||||||||| |||||||| |
|
|
| T |
30560662 |
gcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacggccttgat |
30560580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 30560831 - 30560741
Alignment:
| Q |
97 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttcttt |
187 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || ||||||| ||||| ||||| | || || | |||||||||| |||| |||||| |
|
|
| T |
30560831 |
aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattcttt |
30560741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17417555 - 17417507
Alignment:
| Q |
1 |
tccaaacacttttggttcagcaataattgagccggtttggcgcccttca |
49 |
Q |
| |
|
||||||||| |||||||||||||||| |||| ||||||||||| |||| |
|
|
| T |
17417555 |
tccaaacacctttggttcagcaataaaggagctggtttggcgccattca |
17417507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 29 - 350
Target Start/End: Complemental strand, 20295516 - 20295195
Alignment:
| Q |
29 |
gagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatcta |
128 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20295516 |
gagctggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatcta |
20295417 |
T |
|
| Q |
129 |
acctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgat |
228 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
20295416 |
acctccttgtaatctctttaaacctgctaccgatctcatggcgaaacgcgatgttcattggtttgaaagagttaaatcctctcagtcgaccagactcgat |
20295317 |
T |
|
| Q |
229 |
cgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagca |
328 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20295316 |
cgagtactcatcaaggatatcaccgagcacataaacagcatctttgaggtcttgtaaccattgcttaatagagagttctttgaattgtttcttctcagca |
20295217 |
T |
|
| Q |
329 |
tcttcaagaatagccttgatgt |
350 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
20295216 |
tcttcaagaacagccttgatgt |
20295195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 97 - 349
Target Start/End: Original strand, 52353201 - 52353453
Alignment:
| Q |
97 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa |
196 |
Q |
| |
|
|||||||||||| |||||||||| | ||| || ||||||||||| |||||||| ||||| || || ||||| |||||| || || ||||||||||| |
|
|
| T |
52353201 |
aaacttgttcttcctttcagcaacttgatcgaatctccttgtaatttctttcaatctgtttccaatatcatgacgaaacacaatattttttggtttgaat |
52353300 |
T |
|
| Q |
197 |
gaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa |
296 |
Q |
| |
|
|| | || || | ||||||| ||| | |||||| | |||||||||||||||||||| || ||||||||||||||||| | || | ||||| |||| |
|
|
| T |
52353301 |
gacgataaacccataagtcgactagatttgatcgaacattcatcaaggatatcatcgagaacgtaaacagcatctttgagttgctgaagccatactttaa |
52353400 |
T |
|
| Q |
297 |
tagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatg |
349 |
Q |
| |
|
||||| | ||| ||| |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
52353401 |
tagagcggtctgtgacttgtttctgctcagcatcttcaagaactgccttgatg |
52353453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 29 - 338
Target Start/End: Original strand, 26708504 - 26708798
Alignment:
| Q |
29 |
gagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatcta |
128 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| | |
|
|
| T |
26708504 |
gagctggtttggcgcccttcagctacttgatatgggctttccctaagagttccacccgtctgtagagaaaacttgttcttacgttcagcaatacgatcca |
26708603 |
T |
|
| Q |
129 |
acctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgat |
228 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||| || |||||||| ||| | ||||||||| ||||| ||| |
|
|
| T |
26708604 |
acctccctgtaatctctttcaacctgttaccgatcttatggcgaaac---------------tttaaagaggtgaattttttcagtcgactagacttgat |
26708688 |
T |
|
| Q |
229 |
cgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagca |
328 |
Q |
| |
|
|||| | ||||||||||| |||||||||||||| ||| |||||||||||||||||| ||||| ||||||| || ||| ||| |||| ||||||||||| |
|
|
| T |
26708689 |
cgagcattcatcaaggatgtcatcgagcacatatacaacatctttgaggtcttgtagccataccttaataaagttgtctgtgacttgtctcttctcagca |
26708788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 25292909 - 25292566
Alignment:
| Q |
1 |
tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| || | ||||||||| ||||||||||| | || | ||||||||| |||||||||| | ||| |||| |
|
|
| T |
25292909 |
tccaaatacttttggttcggcaataatagaactagtttggcgctattcagctacttcagttgagctttccctaacagttccaccctgtcgaagaagaaac |
25292810 |
T |
|
| Q |
101 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg |
200 |
Q |
| |
|
||||||||| || ||||||||||||| || ||||||||||||||||||||| |||| || || | |||| ||||| |||||||||||||||||||||||| |
|
|
| T |
25292809 |
ttgttcttagttgcagcaatatcatccaatctccttgtaatctctttcaacttgttgccaatgtaatggtgaaacatgatgttctttggtttgaaagagg |
25292710 |
T |
|
| Q |
201 |
taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
300 |
Q |
| |
|
| ||||| ||||||| ||| | |||| | |||||||||||||||||||||||||||| ||| |||||||||| | ||||| ||||| ||||||||| |
|
|
| T |
25292709 |
atgagcctctaagtcgactagatttgatcaatcactcatcaaggatatcatcgagcacatatacaacatctttgagttgttgtagccataccttaataga |
25292610 |
T |
|
| Q |
301 |
gagttctttgaattgtttcttctcagcatcttcaagaatagcct |
344 |
Q |
| |
|
| | ||| ||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
25292609 |
gcgatctgtgacttgtttctgctcagcatcttcaagaacagcct |
25292566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 7100785 - 7100894
Alignment:
| Q |
236 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
335 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||||| | || | ||||| | ||||||| | ||| | ||||| ||||| ||||| ||||||| |
|
|
| T |
7100785 |
tcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa |
7100884 |
T |
|
| Q |
336 |
gaatagcctt |
345 |
Q |
| |
|
||| |||||| |
|
|
| T |
7100885 |
gaacagcctt |
7100894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 7580457 - 7580415
Alignment:
| Q |
234 |
actcatcaaggatatcatcgagcacataaacagcatctttgag |
276 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
7580457 |
actcatcaaggatatcatcaagcacatacaccgcatctttgag |
7580415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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