View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5659_2D_low_37 (Length: 321)
Name: NF5659_2D_low_37
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_low_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 30337463 - 30337766
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
30337463 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgaaggactctgacttcctttccgtctat |
30337562 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
30337563 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgaaaaaaaaatttgggttt |
30337662 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaatctatcacattagagaagtgtcctgactttgagtatgctgtaatggaaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
30337663 |
gtgtttctgagactttctcggtaaagaggattttgtgttctattatagaatctatcacattagagaagtgtcctgactttgattatgctgtaatggaagg |
30337762 |
T |
|
| Q |
301 |
aaag |
304 |
Q |
| |
|
|||| |
|
|
| T |
30337763 |
aaag |
30337766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 30750814 - 30750511
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
30750814 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctat |
30750715 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
30750714 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgacaattttgaaaaaaaaatttgggttt |
30750615 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaatctatcacattagagaagtgtcctgactttgagtatgctgtaatggaaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30750614 |
gtgtttctgagactttctcggtaaagaggattttgtgttctattatagaatctatcacattagagaagtgtcctgactttgagtatgctgtaatggaaag |
30750515 |
T |
|
| Q |
301 |
aaag |
304 |
Q |
| |
|
|||| |
|
|
| T |
30750514 |
aaag |
30750511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 30061540 - 30061240
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
30061540 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcaagggactctgacttcctttccgtctat |
30061441 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
30061440 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgaaaaaaaaatttgggttt |
30061341 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaatctatcacattagagaagtgtcctgactttgagtatgctgtaatggaaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30061340 |
gtgtttctgagactttctcggtaaagaggattttgtgttctattatagaatctatcacattacagaagtgtcctgactttgattatgctgtaatggaaag |
30061241 |
T |
|
| Q |
301 |
a |
301 |
Q |
| |
|
| |
|
|
| T |
30061240 |
a |
30061240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 30676226 - 30676529
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||| ||||||||| |||| |||||| |
|
|
| T |
30676226 |
tattgctgaatcaaaagtgtttggacgagaagttgatcaagaaaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctat |
30676325 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| | ||||||| |
|
|
| T |
30676326 |
cccatttttggtttaggtggtattggaaaaacaactcttgttcaattgatcttcaatgatgttagggtgagtggccattttgataaaaaagtttgggttt |
30676425 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaatctatcacattagagaagtgtcctgactttgagtatgctgtaatggaaag |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30676426 |
gtgtttctgagactttctcggtcaagaggattttgtgttctattttcgaatctatcacattagagaagtgtcctgactttgagtatgctgtaatggaagg |
30676525 |
T |
|
| Q |
301 |
aaag |
304 |
Q |
| |
|
|||| |
|
|
| T |
30676526 |
aaag |
30676529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 29873342 - 29873039
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29873342 |
tattgttgaaccaaaagtatttggacgagaagatgataaagaaaagattgttgagtttcttctcacccaagcgagggactctgacttcctttccgtctat |
29873243 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
29873242 |
cccattgttggtttaggtggtattggaaaaacaactctcgttcaattggtctacaatgatgttagggtgagtggcaattttgacaaaaatatttgggttt |
29873143 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaatctatcacattagagaagtgtcctgactttgagtatgctgtaatggaaag |
300 |
Q |
| |
|
||||||||||||||||||| || |||||||||| | ||| |||||||||||||||||| |||||||||| ||||||| || | | |||||||||||| |
|
|
| T |
29873142 |
gtgtttctgagactttctctgtcaagaggatttgttgttccattatagaatctatcacaagagagaagtgtgctgacttcgaattagatgtaatggaaag |
29873043 |
T |
|
| Q |
301 |
aaag |
304 |
Q |
| |
|
|||| |
|
|
| T |
29873042 |
aaag |
29873039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 29854479 - 29854198
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||| |
|
|
| T |
29854479 |
tattgctgaaccaaaagtgtttggacgagaagatgataaagaaaagattgttgagtttcttctcacccaaacgagggactcagacttcctttccgtctat |
29854380 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
29854379 |
cccatttttggtttaggtggtgttggaaaaacaactcttcttcaattggtctacaatgatgttagggtgagtggcaattttgataaaaaaatttgggttt |
29854280 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaatctatcacattagagaagtgtcctgactttga |
282 |
Q |
| |
|
| |||||||| |||||||| || ||||| ||||||| ||||||| |||||||||||||| |||||||| | |||||||||| |
|
|
| T |
29854279 |
gcgtttctgaaactttctcagtcaagagaattttgtgttctattgtagaatctatcacaagagagaagtctgctgactttga |
29854198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 34 - 304
Target Start/End: Original strand, 30712399 - 30712669
Alignment:
| Q |
34 |
tgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctatcccatagttggtttaggtggtgttggaaaaaca |
133 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
30712399 |
tgataaagaaaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccattgttggtttaggtggtattggaaaaaca |
30712498 |
T |
|
| Q |
134 |
actcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggtttgtgtttctgagactttctcggtaaagaggattt |
233 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30712499 |
actcttgttcaattgatctacaatgatgttagggtgagtcgcaattttgataaaaaattttgggtttgtgtttctgagactttctcggtcaagaggattt |
30712598 |
T |
|
| Q |
234 |
tgtcttctattatagaatctatcacattagagaagtgtcctgactttgagtatgctgtaatggaaagaaag |
304 |
Q |
| |
|
||| || ||||||||||||||| |||||||||||||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
30712599 |
tgtgttgtattatagaatctattacattagagaagtgtcctgactttgagttagatgtcttggaaagaaag |
30712669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 30207690 - 30207422
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| ||||||||| |||||| | |||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
30207690 |
tattgctgaaccaaaagtatttgggcgagaagatgataaagagaagattatcgagtttcttctcacccaagcgagggactccgacttcctttccgtctat |
30207591 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | ||||||| |
|
|
| T |
30207590 |
cccattgttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgctagggtgagtagcaattttaatacaaaaatatgggttt |
30207491 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaatctatcacattagagaagt |
269 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| || |||||||||||||||||| |||||||| |
|
|
| T |
30207490 |
gtgtttccgagactttctcggtcaagaggattttgtgctccattatagaatctatcacaagagagaagt |
30207422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 34 - 284
Target Start/End: Complemental strand, 30484536 - 30484286
Alignment:
| Q |
34 |
tgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctatcccatagttggtttaggtggtgttggaaaaaca |
133 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| | |||| ||| ||| ||||| |||| ||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
30484536 |
tgataaagaaaagattgtcgagtttcttctcacctatgcgaaggactctaacttcatttctgtctatcccattgttggtttaggtggtattggaaaaaca |
30484437 |
T |
|
| Q |
134 |
actcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggtttgtgtttctgagactttctcggtaaagaggattt |
233 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30484436 |
actcttgttcaattgatctacaatgatgttagggtgagtcgcaattttgataaaaaaatttgggtttgtgtttctgagactttctcggtcaagaggattt |
30484337 |
T |
|
| Q |
234 |
tgtcttctattatagaatctatcacattagagaagtgtcctgactttgagt |
284 |
Q |
| |
|
||| || ||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
30484336 |
tgtgttgtattatagaatctattacattagagaagtgtcatgactttgagt |
30484286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 30436975 - 30436678
Alignment:
| Q |
7 |
tgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctatcccata |
106 |
Q |
| |
|
|||| |||||||||| ||| |||| | |||||||||||||||||| |||||||||| |||| |||| ||| |||||||| |||| ||||||||| | |
|
|
| T |
30436975 |
tgaaacaaaagtgttaggaagagacgatgataaagaaaagattgtccagtttcttcttacccttgcgaaggactctgactttatttctgtctatcccgtt |
30436876 |
T |
|
| Q |
107 |
gttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggtttgtgttt |
206 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
30436875 |
gttggtttaggtggtattggaaaaacaactcttgttcaattgatctacaatgatgttagggtgagtcgcaattttgataaaaaaatttgggtttgtgttt |
30436776 |
T |
|
| Q |
207 |
ctgagactttctcggtaaagaggattttgtcttctattatagaatctatcacattagagaagtgtcctgactttgagtatgctgtaatggaaagaaag |
304 |
Q |
| |
|
|||||||||||||||| || |||||||||| |||||||||||||||||||||| |||||||||| |||||||||| | | |||||||||||||||| |
|
|
| T |
30436775 |
ctgagactttctcggtcaaaaggattttgtgttctattatagaatctatcacaagagagaagtgtgctgactttgatttagatgtaatggaaagaaag |
30436678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 30401242 - 30400992
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
30401242 |
tattgctaaaccagaagtgtttggacgaaaagatgataaagaaaagatttttgagtttcttctcacccatgcgagggactctgacttcctttccgtctac |
30401143 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||||| |
|
|
| T |
30401142 |
cccattgttggtttaggtggtattggtaaaacaactcttgttcaattggtctacaatgatgttagggtgagggactattttgacataagatcttgggttt |
30401043 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaat |
251 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||| |||||||||||||| |
|
|
| T |
30401042 |
gtgtttccgagactttctctgtcaagaggattttgtgttctattatagaat |
30400992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 17417531 - 17417785
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| ||||| | | ||||||||||||||||| ||||||||||| ||||| | ||| ||||||| |||||| |
|
|
| T |
17417531 |
tattgctgaaccaaaggtgtttggacgggaagatgatacaaagaagattgttgagtttctgctcacccaagcaagggattgtgaaatcctttcagtctat |
17417630 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||||| | ||||||||||||||||||||||||||||||| |||||||| | ||| ||| |
|
|
| T |
17417631 |
cccatagttgggttaggtggtattggtaaaacaactctagctcaattggtctacaatgatgttagggtgagtagcaattttaatacaaaaatttggattt |
17417730 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaatctat |
255 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||| ||| || ||||||||||| |
|
|
| T |
17417731 |
gtgtttctgatgctttctcaatcaagaggattttgtgttccatcatagaatctat |
17417785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 30241319 - 30241577
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| | |||||| | ||||||||||||||||||| | ||| || |||||||||||| ||||| |
|
|
| T |
30241319 |
tattactgaaccaaaagtgtttggacgagaagacgataaaaagaagattatccagtttcttctcacccaagcaaaggactccgacttcctttccatctat |
30241418 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
||| | |||| ||||||||| |||||||||| |||||| |||||| ||||||||||||||||| |||||| |||||||| | ||||||| |
|
|
| T |
30241419 |
cccgtttttgggttaggtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggttt |
30241518 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaatctatcaca |
259 |
Q |
| |
|
|||||||||||| |||||| || || |||||||||| ||| |||||| ||| ||||||| |
|
|
| T |
30241519 |
gtgtttctgagaatttctctgtcaacaggattttgtgttccattatacaatttatcaca |
30241577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 30476543 - 30476285
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||| || ||||| ||| | |||||| ||||||||||||||||||||| | ||||||||||| ||| ||||| |
|
|
| T |
30476543 |
tattgctgaacccaaagtgtttggacgagtagatgatagagagaggattgtcgagtttcttctcacccaagcgcaagtatctgacttcctatccatctat |
30476444 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
|| || ||||| ||||||||||||| |||||||| |||| |||| |||||||||||||| |||||| ||| |||||||| | ||| ||| |
|
|
| T |
30476443 |
cctattgttggcctaggtggtgttggtaaaacaacacttgctcaaatggtctacaatgatcatagggtaagtagcaattttaatacaaaagtttggattt |
30476344 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaatctatcaca |
259 |
Q |
| |
|
||||||| ||||||||||| || || |||||||||| ||| |||||||||||||||||| |
|
|
| T |
30476343 |
gtgtttcggagactttctctgtcaaaaggattttgtgttccattatagaatctatcaca |
30476285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 17984023 - 17983906
Alignment:
| Q |
44 |
aagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctatcccatagttggtttaggtggtgttggaaaaacaactcttgttc |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| || |
|
|
| T |
17984023 |
aagattgttgagtttcttctcacccaagcgaggttctctgacttcctttccgtctatcccattgttgggttaggtggtgttggaaaaacaactcttgctc |
17983924 |
T |
|
| Q |
144 |
aattggtctacaatgatg |
161 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
17983923 |
aattggtctacaacgatg |
17983906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 38 - 270
Target Start/End: Original strand, 30330184 - 30330416
Alignment:
| Q |
38 |
aaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctatcccatagttggtttaggtggtgttggaaaaacaactc |
137 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
30330184 |
aaagataagattgtcaagtttcttctcacccaagcgagggacactgacttcctttccatctatcccatagttggtttaggaggtattggaaaaacaacta |
30330283 |
T |
|
| Q |
138 |
ttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggtttgtgtttctgagactttctcggtaaagaggattttgtc |
237 |
Q |
| |
|
|||||| |||| || || ||||| ||||||||||||| |||||| | ||||||||||| | |||||||||||| | || |||||| ||| |
|
|
| T |
30330284 |
ttgttcgattgatccacgatgatattagggtgagtggaaattttaatataataatttgggtttgtgtatatgagactttctctctcaataggattgtgtg |
30330383 |
T |
|
| Q |
238 |
ttctattatagaatctatcacattagagaagtg |
270 |
Q |
| |
|
||||||||||||| |||||| | ||||||||| |
|
|
| T |
30330384 |
ttctattatagaacctatcataagagagaagtg |
30330416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 30520563 - 30520815
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||| ||||||||| |||||||| |||||||||||||||||||| | || |||||| |||||||| ||||| |
|
|
| T |
30520563 |
tattgctgaaccaaaagtatatggtcgagaagatgataaagagaagattgtcgagtttcttctcacccaagcaaagggctctgacctcctttccatctat |
30520662 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
|| || ||||| ||||||||| |||| ||||||||||||| |||||| || || |||||| ||||||||| |||||||| | ||||||| |
|
|
| T |
30520663 |
ccaattgttggcttaggtggtattgggaaaacaactcttgctcaattagtttataatgatcaccgggtgagtgacaattttgatacaaaaatttgggttt |
30520762 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaatct |
253 |
Q |
| |
|
||||||||||| ||||||| || || | ||||||| | |||||||||||||| |
|
|
| T |
30520763 |
gtgtttctgaggctttctctgttaacaaaattttgtgtactattatagaatct |
30520815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 30560903 - 30561155
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||| ||||||||| |||||||| |||||||||||||||||||| | || |||||| |||||||| ||||| |
|
|
| T |
30560903 |
tattgctgaaccaaaagtatatggtcgagaagatgataaagagaagattgtcgagtttcttctcacccaagcaaagggctctgacctcctttccatctat |
30561002 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
|| || ||||| ||||||||| |||| ||||||||||||| |||||| || || |||||| ||||||||| |||||||| | ||||||| |
|
|
| T |
30561003 |
ccaattgttggcttaggtggtattgggaaaacaactcttgctcaattagtttataatgatcaccgggtgagtgacaattttgatacaaaaatttgggttt |
30561102 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaatct |
253 |
Q |
| |
|
||||||||||| ||||||| || || | ||||||| | |||||||||||||| |
|
|
| T |
30561103 |
gtgtttctgaggctttctctgttaacaaaattttgtgtactattatagaatct |
30561155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 26708494 - 26708197
Alignment:
| Q |
7 |
tgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctatcccata |
106 |
Q |
| |
|
|||| |||||| ||| ||| |||| | |||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||| |||| ||||||||||| |
|
|
| T |
26708494 |
tgaaacaaaagcgttgggaagagacgatgataaagaaaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccatt |
26708395 |
T |
|
| Q |
107 |
gttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggtttgtgttt |
206 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||| ||| ||||||| |||||||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
26708394 |
gttggcttaggtggtattggaaaaacaactcttgttcagttgatctacaacgatgttagggtgagtgacaattttgataaaaaaatttgggtttgtgttt |
26708295 |
T |
|
| Q |
207 |
ctgagactttctcggtaaagaggattttgtcttctattatagaatctatcacattagagaagtgtcctgactttgagtatgctgtaatggaaagaaag |
304 |
Q |
| |
|
||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
26708294 |
ctgagactttctcagtcaagaggattttgtgttctattatagaatctatcacattagagaagtgtcctgactttgagttagatgtaatggaaagaaag |
26708197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 25292885 - 25293155
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| ||||||||| |||| ||| ||||||||||| |||||||| ||||| |||||||||||||||||| || |
|
|
| T |
25292885 |
tattgccgaaccaaaagtatttggacgagaagatgataaagagaagactgtcgagtttcttcttacccaagcaagggactctgacttcctttccgtccat |
25292984 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | ||||||| |
|
|
| T |
25292985 |
cccattgttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtagcacttttaatacaaaaatttgggttt |
25293084 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaatctatcacattagagaagtgt |
271 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
25293085 |
gtgtttctgagactttctcggtcaagaggattttgtgttccattatagaatctatcactagagagaagtgt |
25293155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 38939073 - 38939134
Alignment:
| Q |
95 |
gtctatcccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaa |
156 |
Q |
| |
|
|||||| |||| |||||| ||||||| |||||||||||| |||| ||||||||||||||| |
|
|
| T |
38939073 |
gtctattccattgttggtctaggtggatatggaaaaacaacacttgctcaattggtctacaa |
38939134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 34 - 282
Target Start/End: Original strand, 20295553 - 20295801
Alignment:
| Q |
34 |
tgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctatcccatagttggtttaggtggtgttggaaaaaca |
133 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| |||| ||| ||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
20295553 |
tgataaaaaaaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccattgttggtttaggtggtattggaaaaaca |
20295652 |
T |
|
| Q |
134 |
actcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggtttgtgtttctgagactttctcggtaaagaggattt |
233 |
Q |
| |
|
|||||||||||||| ||||||||||||| | | |||||||||||||||| | |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
20295653 |
actcttgttcaattagtctacaatgatgatcgcgtgagtggcaattttgataaaagaatttgggtttgtgtttctgagactttctccttcgagaggattt |
20295752 |
T |
|
| Q |
234 |
tgtcttctattatagaatctatcacattagagaagtgtcctgactttga |
282 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20295753 |
tgcgttctattatagaatctatcacattagagaagtgtcctgactttga |
20295801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 52353122 - 52352873
Alignment:
| Q |
6 |
ctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctatcccat |
105 |
Q |
| |
|
||||||| ||| | |||||||| ||| |||||||| ||||||| ||||||||||||||||||||||| ||| |||||||||| || ||||| || |
|
|
| T |
52353122 |
ctgaaccgaaaatctttggacggaaagaagataaagagaagattgccgagtttcttctcacccaagcgagtaagtttgacttccttgttgtgtatcctat |
52353023 |
T |
|
| Q |
106 |
agttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggtttgtgtt |
205 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| || ||| | |||||||||||| |
|
|
| T |
52353022 |
tgttggtttaggtggtgttggtaaaacaactcttgttcaattggtctacaatgatgttagagtgagtaaaaaatttcatagaaaaatttgggtttgtgtt |
52352923 |
T |
|
| Q |
206 |
tctgagactttctcggtaaagaggattttgtcttctattatagaatctat |
255 |
Q |
| |
|
|||||| |||||| || || |||||||||| ||| |||||||||||||| |
|
|
| T |
52352922 |
tctgaggatttctctgtcaataggattttgtgttccattatagaatctat |
52352873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 13617767 - 13617637
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
|||||||||| |||| |||||||||||| ||| | ||||||| ||||||||| ||||| ||||||||||| ||||| |||||||| ||||| | |||| |
|
|
| T |
13617767 |
tattgctgaatcaaaggtgtttggacgataagataataaagagaagattgttaggtttcatctcacccaagtgagggcctctgactttctttctgactat |
13617668 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaa |
131 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| |
|
|
| T |
13617667 |
cccattgttggtttaggtggtgttgcaaaaa |
13617637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 7580657 - 7580908
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
7580657 |
tattgccgaaccaaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctat |
7580756 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||||| | ||||||| |
|
|
| T |
7580757 |
ccaattgttggtttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggttt |
7580856 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaatc |
252 |
Q |
| |
|
||||||| ||| |||||||| ||| ||||||||| ||| ||||||||||| |
|
|
| T |
7580857 |
gtgtttcagaggtattctcggtcaaggggattttgtgttccattatagaatc |
7580908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 7100589 - 7100338
Alignment:
| Q |
1 |
tattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgagggagtctgacttcctttccgtctat |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||| |
|
|
| T |
7100589 |
tattgctgaaccaaagatgtttggacgagaagatgataaagagaagattgttgagtttcttctcacccaagcaaaggactctgacttcctatccgtctat |
7100490 |
T |
|
| Q |
101 |
cccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgnnnnnnnnntctgggttt |
200 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |||||| | ||||||| |
|
|
| T |
7100489 |
cccattgtcggtttaggtggtgttggaaaaacaactctttctcaattggtttacaatgatgatagggtgagtgacaatttcaaaacaaaaatttgggttt |
7100390 |
T |
|
| Q |
201 |
gtgtttctgagactttctcggtaaagaggattttgtcttctattatagaatc |
252 |
Q |
| |
|
||||||| ||| |||||| || ||| ||||||||| ||| ||||||||||| |
|
|
| T |
7100389 |
gtgtttcagaggttttctcagtcaaggggattttgtgttccattatagaatc |
7100338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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