View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5659_2D_low_43 (Length: 272)

Name: NF5659_2D_low_43
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5659_2D_low_43
NF5659_2D_low_43
[»] chr5 (19 HSPs)
chr5 (1-252)||(30337236-30337487)
chr5 (1-252)||(30061516-30061767)
chr5 (1-252)||(30750790-30751041)
chr5 (29-252)||(30712139-30712362)
chr5 (29-252)||(30484573-30484796)
chr5 (1-252)||(30675999-30676250)
chr5 (1-252)||(29854455-29854706)
chr5 (1-252)||(29873318-29873569)
chr5 (29-177)||(30436985-30437133)
chr5 (97-252)||(30207762-30207917)
chr5 (1-252)||(30401218-30401472)
chr5 (1-252)||(30241104-30241343)
chr5 (10-252)||(30329552-30329791)
chr5 (122-260)||(17417371-17417509)
chr5 (1-196)||(30476519-30476714)
chr5 (97-156)||(29608335-29608394)
chr5 (97-187)||(30520401-30520491)
chr5 (97-187)||(30560741-30560831)
chr5 (1-49)||(17417507-17417555)
[»] chr4 (2 HSPs)
chr4 (29-250)||(20295295-20295516)
chr4 (97-252)||(52353201-52353356)
[»] chr7 (1 HSPs)
chr7 (29-177)||(26708504-26708652)
[»] chr3 (1 HSPs)
chr3 (1-252)||(25292658-25292909)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 30337487 - 30337236
Alignment:
Q  1 tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30337487 tccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac 30337388  T
Q  101 ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg 200  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30337387 ttgttcttacgttcagcaatattatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg 30337288  T
Q  201 taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30337287 taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatc 30337236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 30061516 - 30061767
Alignment:
Q  1 tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30061516 tccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctgggatttccctaagagtgccacccatctgtagagaaaac 30061615  T
Q  101 ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  30061616 ttgttcttactttcagcaatatcatctaacctccttgtaatctctttgaacctgttaccaatctcatggcgaaacatgatgttctttggtttgaaagagg 30061715  T
Q  201 taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatc 252  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30061716 taaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatc 30061767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 30750790 - 30751041
Alignment:
Q  1 tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30750790 tccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac 30750889  T
Q  101 ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  30750890 ttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccaatctcatggcgaaacatgatgttctttggtttgaaagagg 30750989  T
Q  201 taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatc 252  Q
    || |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  30750990 tacatcctctcagtcgacaagacttaatcgagtactcatcaaggatatcatc 30751041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 30712362 - 30712139
Alignment:
Q  29 gagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatcta 128  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30712362 gagctggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatcta 30712263  T
Q  129 acctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgat 228  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  30712262 acctccttgtaatctctttgaacctgttaccaatctcatggcgaaacatgatgttctttagtttgaaagaggtaaatcctctcagtcgaaaagactcgat 30712163  T
Q  229 cgagtactcatcaaggatatcatc 252  Q
    ||||||||||||||||||||||||    
T  30712162 cgagtactcatcaaggatatcatc 30712139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 30484573 - 30484796
Alignment:
Q  29 gagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatcta 128  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||    
T  30484573 gagctggtttggcgcccttcagctacttgatctgggattaccctaagagtttcacccgtctgtagagaaaacttgttctttctttcagcaatatcatcta 30484672  T
Q  129 acctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgat 228  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30484673 acctccttgtaatctctttcaacctgttaccaatctcatggcgaaacatgatgttctttggtttgaaagaggtaaatcctctgagtcgacaagactcgat 30484772  T
Q  229 cgagtactcatcaaggatatcatc 252  Q
    ||||||||||||||||||||||||    
T  30484773 cgagtactcatcaaggatatcatc 30484796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 30676250 - 30675999
Alignment:
Q  1 tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30676250 tccaaacacttttgattcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac 30676151  T
Q  101 ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||  ||||||| |||||||||||||||||| |||||    
T  30676150 ttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttgccgatctcactgcgaaacatgatgttctttggtttgagagagg 30676051  T
Q  201 taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatc 252  Q
       ||||||| ||| ||| ||||| ||| || ||||||||||||||||||||    
T  30676050 atgatcctctaagttgaccagacttgattgaatactcatcaaggatatcatc 30675999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 29854455 - 29854706
Alignment:
Q  1 tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac 100  Q
    ||||||||||||||||||||||||||| |||| |||||| |||| ||||||||||| || || | ||||| ||| | |   ||||  | ||||| |||||    
T  29854455 tccaaacacttttggttcagcaataatggagctggtttgacgccattcagctacttcatttgagctttccttaacaatagtaccctcccgtagaaaaaac 29854554  T
Q  101 ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg 200  Q
    ||||||||||| |||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  29854555 ttgttcttactatcagcaatatcatccaatttccttgtaatctctttcaacctgttgccgatctcatggcgaaacatgatgttctttggtttgaaagagg 29854654  T
Q  201 taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatc 252  Q
    | |||||||| ||| ||| ||||| ||| ||  |||||||||||||||||||    
T  29854655 ttaatcctctaagttgaccagacttgattgaacactcatcaaggatatcatc 29854706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 29873318 - 29873569
Alignment:
Q  1 tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac 100  Q
    |||||| |||||||||||| ||||||| |||| |||||| |||| ||||||||||| || || | ||||| ||| | |   ||||  | ||||| |||||    
T  29873318 tccaaatacttttggttcaacaataatggagctggtttgacgccattcagctacttcatttgagctttccttaacaatagtaccctcccgtagaaaaaac 29873417  T
Q  101 ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg 200  Q
    ||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||||| ||||||     
T  29873418 ttgttcttactatcagcaatatcatccaatctccttgtaatctctttcaacctgttgccgatctcaaggcgaaacatgatgttatttggtttaaaagaga 29873517  T
Q  201 taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatc 252  Q
    |  ||||||| ||| ||| ||||| ||||||| |||||||||||||||||||    
T  29873518 ttgatcctctaagttgaccagacttgatcgagcactcatcaaggatatcatc 29873569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 30436985 - 30437133
Alignment:
Q  29 gagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatcta 128  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||||||||| ||||| | || ||||||||||||||||||| ||||||||||  ||| |    
T  30436985 gagctggtttggcgcccttcagcagcttgatctgggctttccctaagagttacacccgtatggagagaaaacttgttcttacgttcagcaatacgatcca 30437084  T
Q  129 acctccttgtaatctctttcaacctgttaccgatctcatggcgaaactt 177  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  30437085 acctccctgtaatctctttcaacctgttaccgatcttatggcgaaactt 30437133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 252
Target Start/End: Original strand, 30207762 - 30207917
Alignment:
Q  97 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa 196  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || || |||||| | | |||  ||||||||||||||||||||    
T  30207762 aaacttgtttttactttcagcaatatcatctaacctccttgtaatctctttcaatcttttgccaatctcacgacaaaaaatgatgttctttggtttgaaa 30207861  T
Q  197 gaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatc 252  Q
    || |   |  |  | ||||||  ||||||||||||| |||||||||||||||||||    
T  30207862 gatgatgaggcaataagtcgagcagactcgatcgagcactcatcaaggatatcatc 30207917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 30401218 - 30401472
Alignment:
Q  1 tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccac--ccatct-gtagagaa 97  Q
    ||||||||||| ||||| ||||||||| |||  | |||| |||| |||| |||||| ||||| | ||||||||| |  | ||   |||||| |||||  |    
T  30401218 tccaaacacttctggtttagcaataatggagttgatttgacgccattcatctacttcatctgagctttccctaacatatacagtaccatctcgtagaaga 30401317  T
Q  98 aacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaag 197  Q
    || ||||||||| | |||||||||||||| || || ||||||||||||||||||||||| ||||||| | ||||||||  |||||||||||| |||||||    
T  30401318 aatttgttcttaatatcagcaatatcatccaatcttcttgtaatctctttcaacctgttgccgatctgacggcgaaacacgatgttctttgggttgaaag 30401417  T
Q  198 aggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatc 252  Q
    ||    | ||||  ||||||  ||||||||||||  |||||||||||||||||||    
T  30401418 agaatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatc 30401472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 30241343 - 30241104
Alignment:
Q  1 tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttcca---cccatctgtagagaa 97  Q
    |||||||||||||||||||| |||||| | || |||||| |||| ||||||||| | || |||| |||||| || |||||||   ||   ||| ||| ||    
T  30241343 tccaaacacttttggttcagtaataatagcgctggtttgacgccattcagctacgtcatttgggctttcccgaacagttccagtaccttcctgcagaaaa 30241244  T
Q  98 aacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaag 197  Q
    ||||| ||| | || |||||||||||||| |||||||   ||||||||| ||||||||||||||||||||||||||||               |||| ||    
T  30241243 aacttcttcctcctatcagcaatatcatccaacctcccgttaatctcttccaacctgttaccgatctcatggcgaaac---------------ttgagag 30241159  T
Q  198 aggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatc 252  Q
    |||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||    
T  30241158 aggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatc 30241104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 30329791 - 30329552
Alignment:
Q  10 ttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccaccca-tctgtagagaaaacttgttctt 108  Q
    |||||||||||||||||   ||| ||||||||| | ||||||||||| || |||  ||||||||||   || ||||  ||| ||||  ||| ||||||||    
T  30329791 ttttggttcagcaataacaaagctggtttggcgtcattcagctacttcatgtggcctttccctaagtcatctaccctctct-tagatgaaatttgttctt 30329693  T
Q  109 actttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcct 208  Q
    | |||||||||| | |||||| || || ||||| ||||||||||| ||   |||||||||||||||    ||||||||||||||||||||||   | |||    
T  30329692 attttcagcaatcttatctaatcttctggtaatttctttcaacctatt---gatctcatggcgaaatacaatgttctttggtttgaaagaggatgagcct 30329596  T
Q  209 ctcagtcgacaagactcgatcgagtactcatcaaggatatcatc 252  Q
    || | ||||| |||||||||| || |||||||||||||||||||    
T  30329595 ctaattcgaccagactcgatcaagcactcatcaaggatatcatc 30329552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 17417509 - 17417371
Alignment:
Q  122 tcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaag 221  Q
    ||||| || |||||||||||||||| |||||| |  ||||||||| |||||||  |||||||||||||||||||| |||   | ||||| || |||| ||    
T  17417509 tcatcaaatctccttgtaatctcttccaacctttggccgatctcacggcgaaatatgatgttctttggtttgaaataggatgagcctctaagccgaccag 17417410  T
Q  222 actcgatcgagtactcatcaaggatatcatctatcacat 260  Q
    ||||||| ||| |||||||||| |||||||||| |||||    
T  17417409 actcgattgagcactcatcaagaatatcatctagcacat 17417371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 30476519 - 30476714
Alignment:
Q  1 tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatct-gtagagaaaa 99  Q
    |||||||||||| |||||||||||||| ||||  |||||||||| |||||| |||| || |||  ||||||||| |    ||||| ||| ||| |  |||    
T  30476519 tccaaacactttgggttcagcaataatggagcttgtttggcgccattcagcaacttcatttggcctttccctaacaacgacaccc-tctcgtaaaagaaa 30476617  T
Q  100 cttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa 196  Q
    |||||  |||||||||||||| | ||| || ||||||||||| ||||||||||| || ||||| ||| ||||||||   ||||||||| | ||||||    
T  30476618 cttgtctttactttcagcaatttgatcgaatctccttgtaatttctttcaaccttttgccgatgtcacggcgaaacacaatgttctttaggttgaaa 30476714  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 29608394 - 29608335
Alignment:
Q  97 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgtt 156  Q
    |||||| ||||||||||||  ||| | ||| || ||||||||||||||||||||||||||    
T  29608394 aaactttttcttactttcaaaaatttgatcaaatctccttgtaatctctttcaacctgtt 29608335  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 30520491 - 30520401
Alignment:
Q  97 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttcttt 187  Q
    ||||||||| |||||||||||||||||||| || ||  ||||||| ||||| |||||  | || || | |||||||||| |||| ||||||    
T  30520491 aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattcttt 30520401  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 30560831 - 30560741
Alignment:
Q  97 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttcttt 187  Q
    ||||||||| |||||||||||||||||||| || ||  ||||||| ||||| |||||  | || || | |||||||||| |||| ||||||    
T  30560831 aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattcttt 30560741  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17417555 - 17417507
Alignment:
Q  1 tccaaacacttttggttcagcaataattgagccggtttggcgcccttca 49  Q
    ||||||||| ||||||||||||||||  |||| ||||||||||| ||||    
T  17417555 tccaaacacctttggttcagcaataaaggagctggtttggcgccattca 17417507  T

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Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 20295516 - 20295295
Alignment:
Q  29 gagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatcta 128  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20295516 gagctggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatcta 20295417  T
Q  129 acctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgat 228  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||  ||||||| |||||||||||||| |||||||||||||||||| |||||||||    
T  20295416 acctccttgtaatctctttaaacctgctaccgatctcatggcgaaacgcgatgttcattggtttgaaagagttaaatcctctcagtcgaccagactcgat 20295317  T
Q  229 cgagtactcatcaaggatatca 250  Q
    ||||||||||||||||||||||    
T  20295316 cgagtactcatcaaggatatca 20295295  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 252
Target Start/End: Original strand, 52353201 - 52353356
Alignment:
Q  97 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa 196  Q
    |||||||||||| ||||||||||  | ||| || ||||||||||| |||||||| ||||| || || ||||| ||||||   || || |||||||||||     
T  52353201 aaacttgttcttcctttcagcaacttgatcgaatctccttgtaatttctttcaatctgtttccaatatcatgacgaaacacaatattttttggtttgaat 52353300  T
Q  197 gaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatc 252  Q
    || |  || ||  | ||||||| ||| | ||||||  | |||||||||||||||||    
T  52353301 gacgataaacccataagtcgactagatttgatcgaacattcatcaaggatatcatc 52353356  T

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Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 26708504 - 26708652
Alignment:
Q  29 gagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatcta 128  Q
    |||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||| |    
T  26708504 gagctggtttggcgcccttcagctacttgatatgggctttccctaagagttccacccgtctgtagagaaaacttgttcttacgttcagcaatacgatcca 26708603  T
Q  129 acctccttgtaatctctttcaacctgttaccgatctcatggcgaaactt 177  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  26708604 acctccctgtaatctctttcaacctgttaccgatcttatggcgaaactt 26708652  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 25292909 - 25292658
Alignment:
Q  1 tccaaacacttttggttcagcaataattgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaac 100  Q
    |||||| ||||||||||| |||||||| || |  |||||||||  ||||||||||| |  || | ||||||||| ||||||||||    | |||  ||||    
T  25292909 tccaaatacttttggttcggcaataatagaactagtttggcgctattcagctacttcagttgagctttccctaacagttccaccctgtcgaagaagaaac 25292810  T
Q  101 ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg 200  Q
    ||||||||| || ||||||||||||| || ||||||||||||||||||||| |||| || || | |||| ||||| ||||||||||||||||||||||||    
T  25292809 ttgttcttagttgcagcaatatcatccaatctccttgtaatctctttcaacttgttgccaatgtaatggtgaaacatgatgttctttggtttgaaagagg 25292710  T
Q  201 taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatc 252  Q
       | ||||| ||||||| ||| | |||| |  |||||||||||||||||||    
T  25292709 atgagcctctaagtcgactagatttgatcaatcactcatcaaggatatcatc 25292658  T

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