View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5659_2D_low_45 (Length: 252)
Name: NF5659_2D_low_45
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_low_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 30478865 - 30478636
Alignment:
| Q |
18 |
agttcattaatcagcatgcatgtaatg-------taattaattaattaatgatctgaaatacaccgtaactaaagtactaccaccattttcttaaagtac |
110 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30478865 |
agttcattaatcagcatgcatgtaattaattaattaattaattaattaatgatctgaaatacaccgtaactaaagtactaccaccattttcttaaagtac |
30478766 |
T |
|
| Q |
111 |
tattcacaattttatctcttttaatatctgaattaagcttatctgaggaggattttacgctttaaatatctgcctccac-aagaattttgtatccaagtt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |||||| |
|
|
| T |
30478765 |
tattcacaattttatctcttttaatatctgaattaagcttatctgaggaggattttacgctttaattatctgcctccacaaagaatttggtattcaagtt |
30478666 |
T |
|
| Q |
210 |
ccttaaactctcctcttaattatataagtt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
30478665 |
ccttaaactctcctcttaattatataagtt |
30478636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University