View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5659_2D_low_48 (Length: 246)

Name: NF5659_2D_low_48
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5659_2D_low_48
NF5659_2D_low_48
[»] chr2 (9 HSPs)
chr2 (25-241)||(43796759-43796975)
chr2 (28-90)||(12238527-12238589)
chr2 (49-90)||(17317159-17317200)
chr2 (29-68)||(32522090-32522129)
chr2 (25-68)||(40301354-40301397)
chr2 (25-88)||(42839361-42839424)
chr2 (25-66)||(32366154-32366195)
chr2 (57-97)||(2401708-2401748)
chr2 (48-96)||(12223971-12224019)
[»] scaffold0004 (1 HSPs)
scaffold0004 (25-88)||(227688-227751)
[»] chr8 (27 HSPs)
chr8 (30-89)||(9781196-9781255)
chr8 (25-89)||(28280690-28280754)
chr8 (25-91)||(1184762-1184828)
chr8 (25-88)||(2669630-2669693)
chr8 (28-89)||(34286607-34286668)
chr8 (25-89)||(31079207-31079271)
chr8 (28-90)||(28879038-28879100)
chr8 (52-90)||(35168361-35168399)
chr8 (25-65)||(2563363-2563403)
chr8 (57-89)||(14942391-14942423)
chr8 (24-88)||(35453392-35453456)
chr8 (25-84)||(402129-402188)
chr8 (29-68)||(30973991-30974030)
chr8 (25-68)||(42102109-42102152)
chr8 (25-68)||(42363357-42363400)
chr8 (57-91)||(2563323-2563357)
chr8 (53-90)||(18396916-18396953)
chr8 (61-90)||(30973955-30973984)
chr8 (25-65)||(218293-218333)
chr8 (25-65)||(694853-694893)
chr8 (25-65)||(699062-699102)
chr8 (25-65)||(731916-731956)
chr8 (25-65)||(855812-855852)
chr8 (25-65)||(11988202-11988242)
chr8 (29-65)||(19925433-19925469)
chr8 (29-65)||(37410957-37410993)
chr8 (29-65)||(43577226-43577262)
[»] chr3 (13 HSPs)
chr3 (29-89)||(38524069-38524129)
chr3 (28-88)||(37601071-37601131)
chr3 (28-89)||(43376678-43376737)
chr3 (50-90)||(45331361-45331401)
chr3 (29-68)||(3645305-3645344)
chr3 (29-68)||(20894505-20894544)
chr3 (29-68)||(29614196-29614235)
chr3 (61-90)||(2086782-2086811)
chr3 (25-66)||(4257342-4257383)
chr3 (61-90)||(4974277-4974306)
chr3 (33-90)||(19307817-19307874)
chr3 (25-90)||(45049415-45049480)
chr3 (49-89)||(29270472-29270512)
[»] scaffold0091 (1 HSPs)
scaffold0091 (29-96)||(2624-2691)
[»] chr4 (19 HSPs)
chr4 (27-94)||(22397348-22397415)
chr4 (28-83)||(43983426-43983481)
chr4 (28-90)||(7148752-7148814)
chr4 (29-90)||(2141621-2141682)
chr4 (28-89)||(26206398-26206459)
chr4 (34-98)||(48591474-48591538)
chr4 (30-90)||(54412093-54412153)
chr4 (25-68)||(2702756-2702799)
chr4 (29-68)||(15184549-15184588)
chr4 (40-83)||(55852998-55853041)
chr4 (28-66)||(52700588-52700626)
chr4 (25-66)||(9201655-9201696)
chr4 (49-90)||(9319170-9319211)
chr4 (28-89)||(52274164-52274225)
chr4 (49-89)||(825663-825703)
chr4 (61-89)||(2702806-2702834)
chr4 (34-90)||(28663408-28663464)
chr4 (25-61)||(35010220-35010256)
chr4 (29-89)||(43136662-43136722)
[»] chr1 (18 HSPs)
chr1 (25-99)||(8410120-8410194)
chr1 (28-84)||(6337800-6337856)
chr1 (28-88)||(48819281-48819341)
chr1 (25-68)||(15235201-15235244)
chr1 (25-68)||(15791386-15791429)
chr1 (33-95)||(28870199-28870261)
chr1 (25-59)||(29333428-29333462)
chr1 (27-68)||(37148136-37148177)
chr1 (27-68)||(37156961-37157002)
chr1 (25-68)||(22088452-22088495)
chr1 (25-68)||(32497312-32497355)
chr1 (25-68)||(51162271-51162314)
chr1 (49-91)||(37431145-37431187)
chr1 (25-66)||(41003391-41003432)
chr1 (25-65)||(32810875-32810915)
chr1 (48-84)||(38781059-38781095)
chr1 (49-89)||(45267446-45267486)
chr1 (25-88)||(51409748-51409811)
[»] chr6 (6 HSPs)
chr6 (25-90)||(2034270-2034335)
chr6 (29-90)||(32165305-32165366)
chr6 (59-90)||(8011135-8011166)
chr6 (25-68)||(10184370-10184413)
chr6 (28-89)||(10755324-10755385)
chr6 (57-101)||(17914901-17914945)
[»] chr5 (11 HSPs)
chr5 (28-90)||(40696981-40697043)
chr5 (35-90)||(1942990-1943045)
chr5 (25-68)||(15413994-15414037)
chr5 (25-88)||(38461323-38461386)
chr5 (28-90)||(42706776-42706838)
chr5 (25-89)||(28357333-28357397)
chr5 (29-68)||(5203478-5203517)
chr5 (25-68)||(25332279-25332322)
chr5 (25-68)||(33757090-33757133)
chr5 (28-89)||(41534604-41534665)
chr5 (25-65)||(26003002-26003042)
[»] chr7 (12 HSPs)
chr7 (28-89)||(47511024-47511085)
chr7 (25-89)||(29378626-29378690)
chr7 (25-68)||(24371447-24371490)
chr7 (28-89)||(43818923-43818982)
chr7 (29-66)||(18260890-18260927)
chr7 (19-68)||(21027548-21027597)
chr7 (28-89)||(30094775-30094836)
chr7 (28-66)||(35809094-35809132)
chr7 (25-67)||(42083458-42083500)
chr7 (31-89)||(46743931-46743989)
chr7 (57-89)||(22032729-22032761)
chr7 (62-90)||(35809056-35809084)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 43796975 - 43796759
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccccttaactacaacttgcttagtcctctataa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43796975 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccccttaactacaacttgcttagtcctctataa 43796876  T
Q  125 catacgactcattcaaatcaaataaaccttttcctttctttagttgcttatcactgctgtttctatcaccaccaagctcattcttgccattcccatttga 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43796875 catacgactcattcaaatcaaataaaccttttcctttctttagttgcttatcactgctgtttctatcaccaccaagctcattcttgccattcccatttga 43796776  T
Q  225 tgatgattcaccaacac 241  Q
    |||||||||||||||||    
T  43796775 tgatgattcaccaacac 43796759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 12238527 - 12238589
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  12238527 cttataaataatacattaatgcttatttatttgcataagctctaaaataagccaatcccaacg 12238589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 17317200 - 17317159
Alignment:
Q  49 cttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  17317200 cttatttatttacataagctcaaaaataagtcaatccaaacg 17317159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 32522090 - 32522129
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  32522090 ttataaataatacataaaaacttatttatttacataagct 32522129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 40301397 - 40301354
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  40301397 aaacttataaataatacataaaaacttatttatttgcataagct 40301354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 42839361 - 42839424
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 88  Q
    |||||||| |||||||||| || |||||||||| ||||||||||| | ||||| |||| |||||    
T  42839361 aaacttatgaataatacataaaaacttatttatctacataagctcaataataaaccaacccaaa 42839424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 32366195 - 32366154
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataag 66  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  32366195 aaacttataaataatacataaaaacttatttatttgcataag 32366154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 2401708 - 2401748
Alignment:
Q  57 tttacataagctctaaaataagccaatccaaacgacccctt 97  Q
    |||| |||||||||||||||||| ||||||||||| |||||    
T  2401708 tttatataagctctaaaataagctaatccaaacgagccctt 2401748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 12223971 - 12224019
Alignment:
Q  48 acttatttatttacataagctctaaaataagccaatccaaacgacccct 96  Q
    ||||| || ||| ||||||||| ||||||||||||||||||||| ||||    
T  12223971 acttaattctttgcataagctcaaaaataagccaatccaaacgaaccct 12224019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 227751 - 227688
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 88  Q
    ||||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||    
T  227751 aaacttataaatactacattaatgcttatttattcgcataagctctaaaataagccaatccaaa 227688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 9781255 - 9781196
Alignment:
Q  30 tataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  9781255 tataaataatacattaatgcttatttatttgcataagctctaaaataagtcaatccaaac 9781196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 28280754 - 28280690
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    ||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||| |||||||||    
T  28280754 aaacttataaataatacataaatgcatatttatttgcataagctctaaaataagctaatccaaac 28280690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 1184828 - 1184762
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacga 91  Q
    |||||| ||||| |||||||||| ||||||||||| |||||||| |||||||||||||| |||||||    
T  1184828 aaacttttaaatgatacattaatgcttatttatttgcataagctttaaaataagccaattcaaacga 1184762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 2669693 - 2669630
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 88  Q
    |||||||||||||||||||||   ||||||||||| |||||||| |||||||| ||||||||||    
T  2669693 aaacttataaataatacattagagcttatttatttgcataagctataaaataaaccaatccaaa 2669630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 34286607 - 34286668
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    ||||| |||||||||| ||  ||||||||||||||||||||| |||||||| ||||||||||    
T  34286607 cttatgaataatacataaaagcttatttatttacataagctcaaaaataagtcaatccaaac 34286668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 31079207 - 31079271
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    ||||||| ||||||||||| ||| | ||||||||  ||||||||||||||||||| |||||||||    
T  31079207 aaacttaaaaataatacataaatgcatatttattaccataagctctaaaataagctaatccaaac 31079271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 28879100 - 28879038
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    ||||| |||||||||| ||  ||||||||||| ||||||||| ||||||||||||| ||||||    
T  28879100 cttatgaataatacataaaagcttatttatttgcataagctcaaaaataagccaattcaaacg 28879038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 35168399 - 35168361
Alignment:
Q  52 atttatttacataagctctaaaataagccaatccaaacg 90  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  35168399 atttatttacataagctcaaaaataagccaatccaaacg 35168361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 2563403 - 2563363
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataa 65  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  2563403 aaacttataaataatacattaatatttatttatttgcataa 2563363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 14942423 - 14942391
Alignment:
Q  57 tttacataagctctaaaataagccaatccaaac 89  Q
    |||||||||||||||||||||||||||||||||    
T  14942423 tttacataagctctaaaataagccaatccaaac 14942391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 35453456 - 35453392
Alignment:
Q  24 taaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 88  Q
    ||||||||| |||||||||| ||  ||||||||||| ||||||||  ||||||||||||| ||||    
T  35453456 taaacttatgaataatacataaaagcttatttatttgcataagctaaaaaataagccaattcaaa 35453392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 402129 - 402188
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatc 84  Q
    ||||||||||||||||||| || |||||||||||||| | ||||  |||||||| |||||    
T  402129 aaacttataaataatacataaaaacttatttatttacgttagctaaaaaataagacaatc 402188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 30974030 - 30973991
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  30974030 ttataaataatacattaatgcttctttatttacataagct 30973991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 42102152 - 42102109
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  42102152 aaacttataaataatacataaaaacttatttatttgcataagct 42102109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 42363357 - 42363400
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  42363357 aaacttataaataatacataaaaacttatttatttgcataagct 42363400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 2563357 - 2563323
Alignment:
Q  57 tttacataagctctaaaataagccaatccaaacga 91  Q
    ||||||||| |||||||||||||||||||||||||    
T  2563357 tttacataacctctaaaataagccaatccaaacga 2563323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 18396953 - 18396916
Alignment:
Q  53 tttatttacataagctctaaaataagccaatccaaacg 90  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  18396953 tttatttgcataagctcaaaaataagccaatccaaacg 18396916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 30973984 - 30973955
Alignment:
Q  61 cataagctctaaaataagccaatccaaacg 90  Q
    ||||||||||||||||||||||||||||||    
T  30973984 cataagctctaaaataagccaatccaaacg 30973955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 218293 - 218333
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataa 65  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  218293 aaacttataaataatacataaaaatttatttatttacataa 218333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 694853 - 694893
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataa 65  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  694853 aaacttataaataatacataaaaatttatttatttacataa 694893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 699062 - 699102
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataa 65  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  699062 aaacttataaataatacataaaaatttatttatttacataa 699102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 731916 - 731956
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataa 65  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  731916 aaacttataaataatacataaaaatttatttatttacataa 731956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 855812 - 855852
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataa 65  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  855812 aaacttataaataatacataaaaatttatttatttacataa 855852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 11988242 - 11988202
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataa 65  Q
    ||||||||||||||||||| || |||||||||||| |||||    
T  11988242 aaacttataaataatacataaaaacttatttatttgcataa 11988202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 19925433 - 19925469
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataa 65  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  19925433 ttataaataatacattaatgcttatttatttgcataa 19925469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 37410957 - 37410993
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataa 65  Q
    ||||||||||||||| || ||||||||||||||||||    
T  37410957 ttataaataatacataaaaacttatttatttacataa 37410993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 43577262 - 43577226
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataa 65  Q
    |||||||||||||||||||| |||||||||| |||||    
T  43577262 ttataaataatacattaatatttatttatttgcataa 43577226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 38524129 - 38524069
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||    
T  38524129 ttataaataatacattaatacttatttatttgcataaactctaaaataagttaatccaaac 38524069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 37601071 - 37601131
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 88  Q
    |||||||||||||||||||   |||||||||| |||||||||||||||||| |||||||||    
T  37601071 cttataaataatacattaacgtttatttatttgcataagctctaaaataagtcaatccaaa 37601131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 43376737 - 43376678
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    ||||||||||||||||||| ||  |||||||| |||||||| |||||||||| |||||||||    
T  43376737 cttataaataatacattaagac--atttatttgcataagctgtaaaataagctaatccaaac 43376678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 45331361 - 45331401
Alignment:
Q  50 ttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  45331361 ttatttatttacataagctaaaaaataagccaatccaaacg 45331401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 3645344 - 3645305
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  3645344 ttataaataatacataaaaacttatttatttacataagct 3645305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 20894544 - 20894505
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  20894544 ttataaataatacataaaaacttatttatttacataagct 20894505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 29614235 - 29614196
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  29614235 ttataaataatacataaaaacttatttatttacataagct 29614196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 2086782 - 2086811
Alignment:
Q  61 cataagctctaaaataagccaatccaaacg 90  Q
    ||||||||||||||||||||||||||||||    
T  2086782 cataagctctaaaataagccaatccaaacg 2086811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 4257342 - 4257383
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataag 66  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  4257342 aaacttataaataatacataaaaacttatttatttgcataag 4257383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 4974306 - 4974277
Alignment:
Q  61 cataagctctaaaataagccaatccaaacg 90  Q
    ||||||||||||||||||||||||||||||    
T  4974306 cataagctctaaaataagccaatccaaacg 4974277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 19307874 - 19307817
Alignment:
Q  33 aaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    ||||||||| ||||| ||||||||||||| ||| |||||||||| |  ||||||||||    
T  19307874 aaataatactttaatgcttatttatttacgtaaactctaaaatatgttaatccaaacg 19307817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 45049415 - 45049480
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    ||||||||||| |||| |||||| ||| |||||||  |||| || ||||||||| |||||||||||    
T  45049415 aaacttataaacaatatattaatgcttgtttatttgtataaactttaaaataagtcaatccaaacg 45049480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 29270472 - 29270512
Alignment:
Q  49 cttatttatttacataagctctaaaataagccaatccaaac 89  Q
    ||||||||||| ||||||||  |||||||||||||||||||    
T  29270472 cttatttatttgcataagctaaaaaataagccaatccaaac 29270512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 2624 - 2691
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgacccct 96  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||| |||||| |||||    
T  2624 ttataaataatacattaatacttctttatttgcataaactctaaaataagtcaatacaaacggcccct 2691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 22397348 - 22397415
Alignment:
Q  27 acttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccc 94  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||  |||| ||||||||||    
T  22397348 acttataaataatacattaatatttatttatttgtataagctctaaaataaatcaattcaaacgaccc 22397415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 43983426 - 43983481
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaat 83  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  43983426 cttataaataatacattaatgcttatttatttgtataagctctaaaataagccaat 43983481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 7148814 - 7148752
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    ||||| |||||||||| ||  ||||||||||| ||||||||| ||||||||||||||||||||    
T  7148814 cttatgaataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaaacg 7148752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 2141682 - 2141621
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    |||||||||| |||| ||  ||||||||||| ||||||||||||||||||| ||| ||||||    
T  2141682 ttataaataacacataaaagcttatttatttgcataagctctaaaataagctaattcaaacg 2141621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 26206398 - 26206459
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    |||||||||||||||| || || ||||||||| ||||| ||||||||||||  |||||||||    
T  26206398 cttataaataatacataaagacatatttatttgcataaactctaaaataagataatccaaac 26206459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 48591474 - 48591538
Alignment:
Q  34 aataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgacccctta 98  Q
    ||||||| || || |||||||||||| |||||||||  |||||||||||||| ||||| ||||||    
T  48591474 aataatatataaaaacttatttatttgcataagctcagaaataagccaatcctaacgaaccctta 48591538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 54412093 - 54412153
Alignment:
Q  30 tataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    |||||||||||||| || | |||||||||| |||||| |  ||||||||||||||||||||    
T  54412093 tataaataatacataaaaatttatttatttgcataagttaaaaaataagccaatccaaacg 54412153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 2702756 - 2702799
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagct 68  Q
    |||||||||||||||||| |||||||||||||| | ||||||||    
T  2702756 aaacttataaataatacactaatacttatttatgtgcataagct 2702799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 15184588 - 15184549
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  15184588 ttataaataatacataaaaacttatttatttacataagct 15184549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 55853041 - 55852998
Alignment:
Q  40 acattaatacttatttatttacataagctctaaaataagccaat 83  Q
    ||||||||||||||||||||||||||  |||||||||| |||||    
T  55853041 acattaatacttatttatttacataaattctaaaataaaccaat 55852998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 52700588 - 52700626
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataag 66  Q
    |||||||||||||||| || |||||||||||||||||||    
T  52700588 cttataaataatacataaagacttatttatttacataag 52700626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 9201696 - 9201655
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataag 66  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  9201696 aaacttataaataatacataaaaacttatttatttgcataag 9201655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 9319170 - 9319211
Alignment:
Q  49 cttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    ||||||||||||||||||||  |||||||||||| |||||||    
T  9319170 cttatttatttacataagctaaaaaataagccaaaccaaacg 9319211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 52274164 - 52274225
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    ||||| |||||||||| ||   |||||||||| ||||||||| ||||||||||||| |||||    
T  52274164 cttatcaataatacataaaagtttatttatttgcataagctcaaaaataagccaattcaaac 52274225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 825703 - 825663
Alignment:
Q  49 cttatttatttacataagctctaaaataagccaatccaaac 89  Q
    ||||||||||| ||||||||| |||| ||||||||||||||    
T  825703 cttatttatttgcataagctcaaaaagaagccaatccaaac 825663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 89
Target Start/End: Original strand, 2702806 - 2702834
Alignment:
Q  61 cataagctctaaaataagccaatccaaac 89  Q
    |||||||||||||||||||||||||||||    
T  2702806 cataagctctaaaataagccaatccaaac 2702834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 28663464 - 28663408
Alignment:
Q  34 aataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    |||||||||| ||  || |||||||| ||||||||| |||||||| |||||||||||    
T  28663464 aataatacataaaagctcatttatttgcataagctcaaaaataagtcaatccaaacg 28663408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 35010256 - 35010220
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttac 61  Q
    ||||||||||||||||||| || ||||||||||||||    
T  35010256 aaacttataaataatacataaaaacttatttatttac 35010220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 43136662 - 43136722
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    |||| ||||| |||| || |||||||||||  ||||||||| |||||||| ||||||||||    
T  43136662 ttatgaataacacataaagacttatttattcgcataagctcaaaaataagtcaatccaaac 43136722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 8410194 - 8410120
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccccttaa 99  Q
    |||||||| |||||||||| || |||||||||||| |||| |||||||||||||| ||| ||||||| |||||||    
T  8410194 aaacttatgaataatacataaaaacttatttatttgcataggctctaaaataagctaattcaaacgagcccttaa 8410120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 6337800 - 6337856
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatc 84  Q
    ||||| |||||||||| ||  |||||||||||||||||||||||||||||| |||||    
T  6337800 cttatgaataatacataaaagcttatttatttacataagctctaaaataagtcaatc 6337856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 48819341 - 48819281
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 88  Q
    ||||| |||||||||||||  || |||||||| ||||||||| ||||||||||||||||||    
T  48819341 cttatgaataatacattaaagctcatttatttgcataagctcaaaaataagccaatccaaa 48819281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 15235201 - 15235244
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  15235201 aaacttataaataatacataaaaacttatttatttacataagct 15235244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 15791429 - 15791386
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  15791429 aaacttataaataatacataaaaacttatttatttacataagct 15791386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 28870261 - 28870199
Alignment:
Q  33 aaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgacccc 95  Q
    ||||||||||| |||  |||||||||| ||||||||| |||||||||||||| ||||| ||||    
T  28870261 aaataatacataaatgtttatttatttgcataagctcaaaaataagccaatctaaacgccccc 28870199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 29333462 - 29333428
Alignment:
Q  25 aaacttataaataatacattaatacttatttattt 59  Q
    |||||||||||||||||||||||||||||||||||    
T  29333462 aaacttataaataatacattaatacttatttattt 29333428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 37148136 - 37148177
Alignment:
Q  27 acttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  37148136 acttataaataatacattaatgcttatttatttgcataagct 37148177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 37156961 - 37157002
Alignment:
Q  27 acttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  37156961 acttataaataatacattaatgcttatttatttgcataagct 37157002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 22088452 - 22088495
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagct 68  Q
    |||||| |||||||||||| || |||||||||||||||||||||    
T  22088452 aaacttgtaaataatacataaaaacttatttatttacataagct 22088495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 32497312 - 32497355
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  32497312 aaacttataaataatacataaaaacttatttatttgcataagct 32497355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 51162314 - 51162271
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagct 68  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||    
T  51162314 aaacttgtaaataatacattaatgcttatttatttgcataagct 51162271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 37431187 - 37431145
Alignment:
Q  49 cttatttatttacataagctctaaaataagccaatccaaacga 91  Q
    ||||||||||| || |||||| |||||||||||||||||||||    
T  37431187 cttatttatttgcacaagctcaaaaataagccaatccaaacga 37431145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 41003432 - 41003391
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataag 66  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  41003432 aaacttataaataatacataaaaacttatttatttgcataag 41003391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 32810915 - 32810875
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataa 65  Q
    ||||||||||||||||||| ||  |||||||||||||||||    
T  32810915 aaacttataaataatacatgaaggcttatttatttacataa 32810875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 38781095 - 38781059
Alignment:
Q  48 acttatttatttacataagctctaaaataagccaatc 84  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  38781095 acttatttatttgcataagctcaaaaataagccaatc 38781059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 45267486 - 45267446
Alignment:
Q  49 cttatttatttacataagctctaaaataagccaatccaaac 89  Q
    ||||||||||| ||||||||| |||||||| ||||||||||    
T  45267486 cttatttatttgcataagctcaaaaataagtcaatccaaac 45267446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 51409748 - 51409811
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagctctaaaataagcc-aatccaaa 88  Q
    |||||||| ||||||||||  | |||||||||||| ||||||||| |||||||||| ||||||||    
T  51409748 aaacttatgaataatacatacaaacttatttatttgcataagctc-aaaataagcctaatccaaa 51409811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 2034270 - 2034335
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    ||||||||||||||||||| ||  ||||||||||| ||||||||| |||| |||||||||||||||    
T  2034270 aaacttataaataatacataaaagcttatttatttgcataagctcaaaaacaagccaatccaaacg 2034335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 32165305 - 32165366
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    ||||||||||||||| || |||||||||||| ||||| ||||||||||||| ||||||||||    
T  32165305 ttataaataatacataaaaacttatttattttcataaactctaaaataagctaatccaaacg 32165366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 90
Target Start/End: Original strand, 8011135 - 8011166
Alignment:
Q  59 tacataagctctaaaataagccaatccaaacg 90  Q
    ||||||||||||||||||||||||||||||||    
T  8011135 tacataagctctaaaataagccaatccaaacg 8011166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 10184370 - 10184413
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagct 68  Q
    |||||||||||||||| || || |||||||||||||||||||||    
T  10184370 aaacttataaataatagataaaaacttatttatttacataagct 10184413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 10755324 - 10755385
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    ||||| |||||||| | ||  ||||||||||| ||||||||  |||||||||||||||||||    
T  10755324 cttatgaataatacgtaaaagcttatttatttgcataagctaaaaaataagccaatccaaac 10755385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 17914945 - 17914901
Alignment:
Q  57 tttacataagctctaaaataagccaatccaaacgaccccttaact 101  Q
    |||| |||||||||||||||||  ||||||||||| |||||||||    
T  17914945 tttatataagctctaaaataagttaatccaaacgagcccttaact 17914901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 40697043 - 40696981
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    |||||||||||||||| || |||||||||||| ||||||||| |||||||| |||| ||||||    
T  40697043 cttataaataatacataaaaacttatttatttgcataagctcaaaaataagtcaattcaaacg 40696981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 1943045 - 1942990
Alignment:
Q  35 ataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    ||||||||| || ||||||||| || ||||||||| ||||||||||||||||||||    
T  1943045 ataatacataaaaacttatttacttgcataagctcaaaaataagccaatccaaacg 1942990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 15414037 - 15413994
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagct 68  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  15414037 aaacttatcaataatacattaatacttatttatttgcataagct 15413994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 38461323 - 38461386
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 88  Q
    ||||||||||||||||||| ||  |||||||||||  |||||||||||||||||  ||||||||    
T  38461323 aaacttataaataatacataaaggcttatttatttttataagctctaaaataagttaatccaaa 38461386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 42706838 - 42706776
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 90  Q
    ||||| |||||||| | ||  ||||||||||| ||||||||| ||||||||||||||||||||    
T  42706838 cttatgaataatacttaaaagcttatttatttgcataagctcaaaaataagccaatccaaacg 42706776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 28357397 - 28357333
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    |||||||||||||||||||  |  | ||||||||| |||||||| |||||||||| |||||||||    
T  28357397 aaacttataaataatacatataggcatatttatttgcataagctttaaaataagctaatccaaac 28357333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 5203478 - 5203517
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  5203478 ttataaataatacataaatacttatttatttgcataagct 5203517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 25332279 - 25332322
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagct 68  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||    
T  25332279 aaacttataaataatatattaatgcttatttatttgcataagct 25332322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 33757133 - 33757090
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagct 68  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  33757133 aaacttataaataatacataaaaacttatttatttgcataagct 33757090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 41534665 - 41534604
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    ||||| |||||||||| ||  ||||||||||| ||||| ||  |||||||||||||||||||    
T  41534665 cttatgaataatacataaaagcttatttatttgcataatctgaaaaataagccaatccaaac 41534604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 26003042 - 26003002
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataa 65  Q
    ||||||||||||||||||| || |||||||||||| |||||    
T  26003042 aaacttataaataatacataaaaacttatttatttgcataa 26003002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 47511085 - 47511024
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    ||||| |||||||||| ||  ||||||||||| ||||||||| |||||||||||||||||||    
T  47511085 cttatgaataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaaac 47511024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 29378690 - 29378626
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    ||||| ||||||||||||| ||  ||||||||||| ||||||||| || ||||||||||||||||    
T  29378690 aaactcataaataatacataaaagcttatttatttgcataagctcaaagataagccaatccaaac 29378626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 24371447 - 24371490
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagct 68  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  24371447 aaacttataaataatacattaaaacttatttatttgcataagct 24371490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 43818923 - 43818982
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    |||||||||||||||| || ||  |||||||| ||||||||||||||||||| |||||||||    
T  43818923 cttataaataatacataaagac--atttatttgcataagctctaaaataagctaatccaaac 43818982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 18260890 - 18260927
Alignment:
Q  29 ttataaataatacattaatacttatttatttacataag 66  Q
    |||||| |||||||||||||||||||||||||||||||    
T  18260890 ttataactaatacattaatacttatttatttacataag 18260927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 21027548 - 21027597
Alignment:
Q  19 cttactaaacttataaataatacattaatacttatttatttacataagct 68  Q
    |||| |||||||||||||||||||| || |||||||| ||||||||||||    
T  21027548 cttaataaacttataaataatacataaaaacttatttgtttacataagct 21027597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 30094775 - 30094836
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    ||||||||||||| ||||| ||  ||||||||  |||||||||||||||||| |||||||||    
T  30094775 cttataaataatatattaagacacatttatttgtataagctctaaaataagctaatccaaac 30094836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 35809132 - 35809094
Alignment:
Q  28 cttataaataatacattaatacttatttatttacataag 66  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  35809132 cttataaataatacattaatgcttatttatttgcataag 35809094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 42083458 - 42083500
Alignment:
Q  25 aaacttataaataatacattaatacttatttatttacataagc 67  Q
    |||||||| |||||||||| || ||||||||||||||||||||    
T  42083458 aaacttatgaataatacataaaaacttatttatttacataagc 42083500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 46743989 - 46743931
Alignment:
Q  31 ataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 89  Q
    ||||||||||||| ||  ||||||||||| ||| ||||| ||| |||||||||||||||    
T  46743989 ataaataatacataaaatcttatttatttgcatgagctcaaaagtaagccaatccaaac 46743931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 22032761 - 22032729
Alignment:
Q  57 tttacataagctctaaaataagccaatccaaac 89  Q
    ||||||||||||||||||||||| |||||||||    
T  22032761 tttacataagctctaaaataagctaatccaaac 22032729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 35809084 - 35809056
Alignment:
Q  62 ataagctctaaaataagccaatccaaacg 90  Q
    |||||||||||||||||||||||||||||    
T  35809084 ataagctctaaaataagccaatccaaacg 35809056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University