View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_2D_low_52 (Length: 218)
Name: NF5659_2D_low_52
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_low_52 |
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| [»] scaffold0564 (2 HSPs) |
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Alignment Details
Target: scaffold0564 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 10726 - 10904
Alignment:
| Q |
23 |
ttaatatggttcaaatcaggaactatgtcatgaactcccctgctaaaagacatgttgcttttaatctctgtaattgtttggtctcaagcaacatgttgag |
122 |
Q |
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|||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10726 |
ttaatatgcttcaattcaggaactatgccatgaactcccctgctaaaagacatgttgcttttaatctctgtaattgtttggtctcaagcaacatgttgag |
10825 |
T |
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| Q |
123 |
tcacttgataggggtgtacatcaatacatgctaaataaactgaactgatttgaaccatattaatggttcagtaccttaa |
201 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10826 |
tcacttgataggggtgtacatcaatacatggtaaataaactgaactgatttgaaccatattaatggttcagtaccttaa |
10904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0564; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 10904 - 10870
Alignment:
| Q |
7 |
ttaaggtactgagccattaatatggttcaaatcag |
41 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
10904 |
ttaaggtactgaaccattaatatggttcaaatcag |
10870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 39489936 - 39490114
Alignment:
| Q |
23 |
ttaatatggttcaaatcaggaactatgtcatgaactcccctgctaaaagacatgttgcttttaatctctgtaattgtttggtctcaagcaacatgttgag |
122 |
Q |
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|||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39489936 |
ttaatatgcttcaattcaggaactatgccatgaactcccctgctaaaagacatgttgcttttaatctctgtaattgtttggtctcaagcaacatgttgag |
39490035 |
T |
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| Q |
123 |
tcacttgataggggtgtacatcaatacatgctaaataaactgaactgatttgaaccatattaatggttcagtaccttaa |
201 |
Q |
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| T |
39490036 |
tcacttgataggggtgtacatcaatacatggtaaataaactgaactgatttgaaccatattaatggttcagtaccttaa |
39490114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 39490114 - 39490080
Alignment:
| Q |
7 |
ttaaggtactgagccattaatatggttcaaatcag |
41 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
39490114 |
ttaaggtactgaaccattaatatggttcaaatcag |
39490080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 12749101 - 12748923
Alignment:
| Q |
23 |
ttaatatggttcaaatcaggaactatgtcatgaactcccctgctaaaagacatgttgcttttaatctctgtaattgtttggtctcaagcaacatgttgag |
122 |
Q |
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|||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12749101 |
ttaatatgcttcaattcaggaactatgccatgaactcccctgctaaaagacatgttgcttttaatctctgtaattgtttggtctcaagcaacatgttgag |
12749002 |
T |
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| Q |
123 |
tcacttgataggggtgtacatcaatacatgctaaataaactgaactgatttgaaccatattaatggttcagtaccttaa |
201 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12749001 |
tcacttgataggggtgtacatcaatacatggtaaataaactgaactgatttgaaccatattaatggttcagtaccttaa |
12748923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 12748923 - 12748957
Alignment:
| Q |
7 |
ttaaggtactgagccattaatatggttcaaatcag |
41 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
12748923 |
ttaaggtactgaaccattaatatggttcaaatcag |
12748957 |
T |
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