View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5659_2D_low_55 (Length: 213)

Name: NF5659_2D_low_55
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5659_2D_low_55
NF5659_2D_low_55
[»] chr7 (2 HSPs)
chr7 (109-168)||(36735972-36736031)
chr7 (5-57)||(36736081-36736135)
[»] chr8 (2 HSPs)
chr8 (1-34)||(27077138-27077171)
chr8 (1-34)||(42006774-42006807)
[»] chr6 (1 HSPs)
chr6 (1-34)||(31935095-31935128)
[»] chr2 (1 HSPs)
chr2 (1-34)||(6636008-6636041)
[»] scaffold0460 (1 HSPs)
scaffold0460 (1-29)||(13244-13272)
[»] chr5 (1 HSPs)
chr5 (1-33)||(29154840-29154872)


Alignment Details
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 36736031 - 36735972
Alignment:
Q  109 tcaatttaacatggactaatactaatgttaaaactttttatagtgactaaaacatgtcac 168  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36736031 tcaatttaacatggactaaaactaatgttaaaactttttatagtgactaaaacatgtcac 36735972  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 36736135 - 36736081
Alignment:
Q  5 cctaccaactgagctaagcgcaca--gagatacattttagaatgttctagtgtat 57  Q
    ||||||||||||||||||| | ||  || ||||||||||||||||||||||||||    
T  36736135 cctaccaactgagctaagctctcacggaaatacattttagaatgttctagtgtat 36736081  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 27077138 - 27077171
Alignment:
Q  1 tatccctaccaactgagctaagcgcacagagata 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  27077138 tatccctaccaactgagctaagctcacagagata 27077171  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 42006807 - 42006774
Alignment:
Q  1 tatccctaccaactgagctaagcgcacagagata 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  42006807 tatccctaccaactgagctaagctcacagagata 42006774  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 31935128 - 31935095
Alignment:
Q  1 tatccctaccaactgagctaagcgcacagagata 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  31935128 tatccctaccaactgagctaagctcacagagata 31935095  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6636008 - 6636041
Alignment:
Q  1 tatccctaccaactgagctaagcgcacagagata 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  6636008 tatccctaccaactgagctaagctcacagagata 6636041  T

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Target: scaffold0460 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 13244 - 13272
Alignment:
Q  1 tatccctaccaactgagctaagcgcacag 29  Q
    |||||||||||||||||||||||||||||    
T  13244 tatccctaccaactgagctaagcgcacag 13272  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29154872 - 29154840
Alignment:
Q  1 tatccctaccaactgagctaagcgcacagagat 33  Q
    ||||||||||||||||||||||| |||||||||    
T  29154872 tatccctaccaactgagctaagctcacagagat 29154840  T

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