View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_2D_low_59 (Length: 202)
Name: NF5659_2D_low_59
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_low_59 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 34865456 - 34865640
Alignment:
| Q |
18 |
acatcaaatggattcaaattcatggatataataactaaccataattctcgaggaagatttagccagtcaactgcgtcatcatccatcatcacacactttt |
117 |
Q |
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| T |
34865456 |
acatcaaatggattcaaattcttggatataataactaaccataattctcgaggaagatttagccagtcaactgcgtcatcatccatcatcacacactttt |
34865555 |
T |
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| Q |
118 |
tcttcaagtctccgtcaccagtccctgctgccactctgcccgttcttttcttttataataatttatatttatatataaggaatcc |
202 |
Q |
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| T |
34865556 |
tcttcaagtctccgtcaccagtccctgctgccactctgcccgttcttttcttttataataatttatatttatatataaggaatcc |
34865640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 40 - 189
Target Start/End: Complemental strand, 51858077 - 51857927
Alignment:
| Q |
40 |
tggatataataactaaccataattctcgaggaagatttagccagtcaactgcgtcatcatccatcatcacacactttttcttcaagtctccgtcaccagt |
139 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||| |||||||||||| |||||||||||||||| || | || |
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| T |
51858077 |
tggatataataactaaccataagtctcgaggaagatttagccaatcaaccgtgtcatcatctatcatcacacacactttcttcaagtctccg-catctgt |
51857979 |
T |
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| Q |
140 |
ccctgctgccactctgcccgttcttttc--ttttataataatttatatttat |
189 |
Q |
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| T |
51857978 |
tcctgctgctactctgcccattcttttcttttttttgataatttatatttat |
51857927 |
T |
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