View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_2D_low_60 (Length: 202)
Name: NF5659_2D_low_60
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_low_60 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 70 - 202
Target Start/End: Complemental strand, 34865748 - 34865616
Alignment:
| Q |
70 |
gaagatgatagaaatcatttaattttttaaataattttcattttggtgcaggctattgaaatcgtatgattttcatggtgtattcaatgttacgcaaaaa |
169 |
Q |
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| T |
34865748 |
gaagatgatagaaatcatttaattttttaaataattttcattttggtgcaggctattgaaatcatatgattttcatggtgtattcaatgttacgcaaaaa |
34865649 |
T |
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| Q |
170 |
tatctcacggattccttatatataaatataaat |
202 |
Q |
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| T |
34865648 |
tatctcatggattccttatatataaatataaat |
34865616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 34865456 - 34865513
Alignment:
| Q |
18 |
acatcaaatggattcaaattcatggatataataactaaccataattctcgaggaagat |
75 |
Q |
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| T |
34865456 |
acatcaaatggattcaaattcttggatataataactaaccataattctcgaggaagat |
34865513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 51857864 - 51857908
Alignment:
| Q |
125 |
ttgaaatcgtatgattttcatggtgtattcaatgttacgcaaaaa |
169 |
Q |
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| T |
51857864 |
ttgaaatcgtatgattttcatggtgtattcaatgttatgcaaaaa |
51857908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 51858077 - 51858042
Alignment:
| Q |
40 |
tggatataataactaaccataattctcgaggaagat |
75 |
Q |
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| T |
51858077 |
tggatataataactaaccataagtctcgaggaagat |
51858042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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