View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5659_2D_low_8 (Length: 750)
Name: NF5659_2D_low_8
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 136 - 493
Target Start/End: Original strand, 5021285 - 5021643
Alignment:
| Q |
136 |
aatcgaaggaaagaagaaaaaataatggatgtttgaaaagaatcttcagttgagtaatgaaattaaattcttaaggaatgtacaatactttagaagaaga |
235 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5021285 |
aatcgaaggaaagaagaaaaaataattgatgtttgaaaagaatcttcagttgagtaatggaattaaattcttaaggaatgtacaatactttagaagaaga |
5021384 |
T |
|
| Q |
236 |
agaattggtttttcctgg-ttttgtcatgttcggtaaacaatgggttttgtcaaaatatcactgcgtgagttaactcacgcagatgtatacccaacgtga |
334 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5021385 |
agaattggtttttcctgggttttgtcatgttcggtaaataatgggttttgtcaaaatatcactgcgtgagttaactcacgcagatgtatacccaacgtga |
5021484 |
T |
|
| Q |
335 |
ctcacgccgttgggttatacatctgcatcacacacgagtattttggaagagagcattttttgttggaagaagagcaattttcttacatgtaactatgaaa |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
5021485 |
ctcacgccgttgggttatacatctgcatcacacacgagtattttggaagagagcattttttgttgggagaagagcaatttccttacatgtaactatgaaa |
5021584 |
T |
|
| Q |
435 |
tttatgagtcatagagatattcattcacaccatgcattctgatgttttaggtgttgata |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5021585 |
tttatgagtcatagagatattcattcacaccatgcattctgatgttttaggtgttgata |
5021643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 600 - 718
Target Start/End: Original strand, 5021885 - 5022003
Alignment:
| Q |
600 |
actaaaattaacatttggtatatttaagggaaccaaaatcataattaacccttaaaaataaaaggcactaacatggaaccaaatgcttccaactcacctg |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5021885 |
actaaaattaacatttggtatatttaagggaaccaaaatcataattaacccttaaaaataaaaggcactaacatggaaccaaatgcttccaactcacttg |
5021984 |
T |
|
| Q |
700 |
agaagcaacataaacaagc |
718 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5021985 |
agaagcaacataaacaagc |
5022003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 595
Target Start/End: Original strand, 5021706 - 5021745
Alignment:
| Q |
556 |
ataacacaatttttctttaattgattcatgttcatgtgaa |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5021706 |
ataacacaatttttctttaattgattcatgttcatgtgaa |
5021745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 671 - 716
Target Start/End: Original strand, 23712016 - 23712061
Alignment:
| Q |
671 |
catggaaccaaatgcttccaactcacctgagaagcaacataaacaa |
716 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
23712016 |
catggagccaaatgcttccagctcacttgagaagcaacataaacaa |
23712061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 601 - 651
Target Start/End: Complemental strand, 2401857 - 2401807
Alignment:
| Q |
601 |
ctaaaattaacatttggtatatttaagggaaccaaaatcataattaaccct |
651 |
Q |
| |
|
||||||| |||| |||||||||||||||| || |||| ||||||||||||| |
|
|
| T |
2401857 |
ctaaaatcaacaattggtatatttaaggggacaaaaaacataattaaccct |
2401807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University