View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_2D_low_9 (Length: 630)
Name: NF5659_2D_low_9
Description: NF5659_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_2D_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 19 - 626
Target Start/End: Complemental strand, 13945376 - 13944770
Alignment:
| Q |
19 |
ggttgatggccatgcaatctggccaggtggaggtgcagtctggcacgacccctatgaaaacgcaaacaaaggaggtggtgaaaatacaaacagaggtggt |
118 |
Q |
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| T |
13945376 |
ggttgatggccatgcaatctggccaggtggaggtgcagtctggcacgacccctatgaaaacgcaaacaaaggaggtgatgaaaatacaaacagaggtggt |
13945277 |
T |
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| Q |
119 |
tgtggaatcgtcataaatttttctggtggtgataaatgtggcggaggtggaaacgtcgtaaactttcatgacggtggaaaagggagcggcaatggaaaat |
218 |
Q |
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| T |
13945276 |
tgtggaatcgtcataaatttttctggtggtgataaatgtggcggaggtggaaacgtcgtaaactttcatgacggtggaaaagggagcggcaatggaaaat |
13945177 |
T |
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| Q |
219 |
agatgggggatgcaagtaaagcattagaaaatccttcacagtaaactagacacatatacatgtatgttgtatctcatgttgacacgatacaaatgtcgta |
318 |
Q |
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| T |
13945176 |
agatgggggatgcaagtaaagcattagaaaatccttcacggtaaactagacacatatacatgtatgttgtatctcatgttgacacgatacaaatgtcgta |
13945077 |
T |
|
| Q |
319 |
agaaatataaaataaatattggtgtgacatgctaaacatgaaagtataatatctccccttc--nnnnnnnntgaaagtgtagtatctaataatttgtagt |
416 |
Q |
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| T |
13945076 |
agaaatataaaataaatattggtgtgacatgctaaacatgaaagtataatatctccccttcaaaaaaaaaatgaaagtataatatctaataatttgtagt |
13944977 |
T |
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| Q |
417 |
ttaaggaggtaatcatctatacttaaagtataaatttccaaaaacttttcacgaaaggaaataagttctcactattcacgtggtcatttaacacaccaca |
516 |
Q |
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| T |
13944976 |
ttaaggaggtaatcatctatacttaaagtataaatttccaaaaacttttcacgaaaggaaataagttctcactattcacgtcgtcatttaacacaccaca |
13944877 |
T |
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| Q |
517 |
agaatcaatgacaaaactgattaaactaaatgattgtatctcataataatgttaaatagtagagatgagttgaaatagacatataaatgaatttatatac |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13944876 |
agaatcaatgacaaaactgattaaactaaatgattgtatctc---ataatgttaaatagtagagatgagttgaaatagacatataaatgaatttataaac |
13944780 |
T |
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| Q |
617 |
atagaataat |
626 |
Q |
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| T |
13944779 |
atagaataat |
13944770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 13939576 - 13939502
Alignment:
| Q |
261 |
aaactagacacatatacatgtatgttgtatctcatgttgacacgata-caaatgtcgtaagaaatataaaataaa |
334 |
Q |
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||||||||| |||||||||||||| |||||| |||| ||| | ||| ||||||| ||||||||| ||||||||| |
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| T |
13939576 |
aaactagacgcatatacatgtatgatgtatcccatgctgatgcaatatcaaatgttgtaagaaatgtaaaataaa |
13939502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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