View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_high_10 (Length: 245)
Name: NF5659_high_10
Description: NF5659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 52727253 - 52727017
Alignment:
| Q |
1 |
ttaacaagcttcaaaagttgagtgtggaagggaaccctctcacttcaccaccaccagaagtggtagagaggggattgcatatagtgaaggagtacttgtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52727253 |
ttaacaagcttcaaaagttgagtgtggaagggaaccctctcacttcaccaccaccagaagtcgtagagaggggattgcatatagtgaaggagtacttgtg |
52727154 |
T |
|
| Q |
101 |
caacaagatgaatgctggtcatcaaagcccaacaaagaagaagtcttgggttggaaggttggtcaagtatggaacattcaatgttagaagtggagctcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52727153 |
caacaagatgaatgctggtcatcaaagcccaacaaagaagaagtcttgggttggaaggttggtcaagtatggaacattcaatgttagaagtggagctcgt |
52727054 |
T |
|
| Q |
201 |
gaagaacatgaggctttcatcctccccgagtataatc |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
52727053 |
gaagaacatgaggctttcatcctccccgagtataatc |
52727017 |
T |
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