View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5659_low_14 (Length: 236)
Name: NF5659_low_14
Description: NF5659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 27916041 - 27915839
Alignment:
| Q |
1 |
actatcaaaactgtttttggaattcttaccctaacttaagagatgtgtcagaggaatcatcttcaagagaagggccactattacagctgctgacattatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27916041 |
actatcaaaactgtttttggaattcttaccctaacttaagagatgtgtcagaggaatcatcttcaagagaagggccactattacagctgctgacattatt |
27915942 |
T |
|
| Q |
101 |
catggactctgctgagacattttcttgcatggtaatatctgagtccccaaagattggactttttcccatacttaacatagccatctgtgagaaagctaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27915941 |
catggactctgctgagacattttcttgcatggtaatatctgagtccccaaagattggactttttcccatacttaacatagccatctgtgagaaagctaac |
27915842 |
T |
|
| Q |
201 |
cac |
203 |
Q |
| |
|
||| |
|
|
| T |
27915841 |
cac |
27915839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University