View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_low_2 (Length: 451)
Name: NF5659_low_2
Description: NF5659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_low_2 |
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| [»] scaffold0037 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 434
Target Start/End: Complemental strand, 8059428 - 8059011
Alignment:
| Q |
13 |
aatataaaaaacaatagttgatttaagtgcgtcgaacaagactcaaacagttcaaccatcaacgaaatcataacctgtattctccaaaccatcggtgcta |
112 |
Q |
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| T |
8059428 |
aatataaaaaacaatagttgatttaagtgcgtcgaacaagactcaaacagttcaaccatcaacgaaatcacaacctgtattctccaaaccatcggtgcta |
8059329 |
T |
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| Q |
113 |
gtgtcagcttcacgatatgaatgacaaattggatttatgattgtgtgagctacatacatatatgagggataattgcaaccataggaatccaggatatgac |
212 |
Q |
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| T |
8059328 |
gtgtcagcttcacgatatgaatgacaaattggatttatgattgtgtgatctacata----taggaggaataattgcaaccataggaatccaggatatgac |
8059233 |
T |
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| Q |
213 |
tgtcatgagacaaagttgattcaagatatgtcttattcacaggcttgtaaagagaagaaaatgaaatatcaaattcacttcaatttctcttagacagatg |
312 |
Q |
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| T |
8059232 |
tgtcatgagacaatgttgattcaagatatgtcttattcacaggcttgtaaagagaagaaaatgaaatatcaaattcacttcaatgtctcttagacagatg |
8059133 |
T |
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| Q |
313 |
cattgtatagaagagtaggaccatctcaattctcatcactcaannnnnnnnattaattatgacagtatcatgtcagatacattagtagaatgaaaaacaa |
412 |
Q |
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| T |
8059132 |
cattgtatagaagagtaggaccatctcaattctcatcactcaattttttttattaattatgacagtatcatgtcagatacattagtagaatgaaaaacaa |
8059033 |
T |
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| Q |
413 |
aattggttagcatggaatttct |
434 |
Q |
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| T |
8059032 |
aattggtcagcatggaatttct |
8059011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 221 - 413
Target Start/End: Original strand, 10428722 - 10428908
Alignment:
| Q |
221 |
gacaaagttgattcaagatatgtcttattcacaggcttgtaaagagaagaaaatgaaatatcaaattcacttcaatttctcttagacagatgcattgtat |
320 |
Q |
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| T |
10428722 |
gacaacgttgattcaagatatgtctcatttatcgtcttgtaaagagaagaaaatgaaatatcaaattcacttcaatgtcctttagaca---------tat |
10428812 |
T |
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| Q |
321 |
agaagagtaggaccatctcaattctcatcactcaa---nnnnnnnnattaattatgacagtatcatgtcagatacattagtagaatgaaaaacaaa |
413 |
Q |
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| T |
10428813 |
gaaagagtatgagcatctcaattctcatcactcaatttttttttttattaattacgacagtgtcatgtcggatacattagtaaaatgaaaaacaaa |
10428908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 413
Target Start/End: Original strand, 34767 - 34959
Alignment:
| Q |
216 |
catgagacaaagttgattcaagatatgtcttattcacaggcttgtaaagagaagaaaatgaaatatcaaattcacttcaatttctcttagacagatgcat |
315 |
Q |
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| T |
34767 |
catgggacaacgttgattcaagatatgtctcatttatcgtcttgtaaagagaagaaaatgaaatatcaaattcacttcaatgtcctttagacatatgaa- |
34865 |
T |
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| Q |
316 |
tgtatagaagagtaggaccatctcaattctcatcactcaannnnnnnn----attaattatgacagtatcatgtcagatacattagtagaatgaaaaaca |
411 |
Q |
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| T |
34866 |
--------agagtatgaccatctcaattatcatcactcaattttttttttttattaattacgaccgtgtcatgtcggatacattagtaaaatgaaaaaca |
34957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 296
Target Start/End: Original strand, 34661 - 34847
Alignment:
| Q |
121 |
ttcacgatatgaatgacaaattggattta--tgattgtgtgagctacatacatatatgagggataattgcaaccataggaatccaggatat---ga---- |
211 |
Q |
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| T |
34661 |
ttcacgatatgaatgacaaattggatttatgtgattgtgt----tac-tacctatatgagggttaattgcaaccatatgaataaaggtcatacagaaaag |
34755 |
T |
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| Q |
212 |
-------ctgtcatgagacaaagttgattcaagatatgtcttattcacaggcttgtaaagagaagaaaatgaaatatcaaattcacttcaat |
296 |
Q |
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| T |
34756 |
gaaaaacatggcatgggacaacgttgattcaagatatgtctcatttatcgtcttgtaaagagaagaaaatgaaatatcaaattcacttcaat |
34847 |
T |
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