View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5659_low_3 (Length: 427)

Name: NF5659_low_3
Description: NF5659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5659_low_3
NF5659_low_3
[»] chr7 (18 HSPs)
chr7 (10-260)||(39038046-39038295)
chr7 (43-152)||(21863945-21864057)
chr7 (17-141)||(8069958-8070085)
chr7 (48-246)||(8113319-8113517)
chr7 (10-152)||(15995301-15995446)
chr7 (49-142)||(13754207-13754303)
chr7 (49-150)||(35477885-35477989)
chr7 (17-141)||(48238834-48238961)
chr7 (49-119)||(4539953-4540027)
chr7 (49-144)||(18667460-18667558)
chr7 (192-259)||(9420916-9420983)
chr7 (77-134)||(3123690-3123750)
chr7 (192-246)||(5771272-5771326)
chr7 (48-141)||(19311534-19311630)
chr7 (17-141)||(6188995-6189122)
chr7 (17-141)||(6195511-6195638)
chr7 (193-226)||(12380268-12380301)
chr7 (51-119)||(20394724-20394795)
[»] chr5 (19 HSPs)
chr5 (10-142)||(5120416-5120551)
chr5 (49-151)||(29150689-29150794)
chr5 (48-152)||(43170927-43171034)
chr5 (49-151)||(13820518-13820623)
chr5 (51-151)||(13825865-13825966)
chr5 (10-119)||(26402327-26402439)
chr5 (77-152)||(16686642-16686720)
chr5 (49-151)||(13490482-13490587)
chr5 (49-147)||(20891038-20891139)
chr5 (17-141)||(38491422-38491549)
chr5 (17-73)||(7850690-7850746)
chr5 (49-151)||(23962942-23963048)
chr5 (49-151)||(5578515-5578620)
chr5 (78-144)||(37135206-37135275)
chr5 (192-246)||(16686546-16686600)
chr5 (49-150)||(39537307-39537411)
chr5 (193-226)||(41870406-41870439)
chr5 (192-260)||(42879830-42879897)
chr5 (192-260)||(43170825-43170893)
[»] scaffold1266 (1 HSPs)
scaffold1266 (43-152)||(1659-1771)
[»] chr6 (19 HSPs)
chr6 (50-151)||(13758492-13758596)
chr6 (77-146)||(31130056-31130125)
chr6 (77-151)||(15060263-15060340)
chr6 (49-150)||(20990531-20990635)
chr6 (78-152)||(22524995-22525069)
chr6 (53-142)||(26817715-26817807)
chr6 (99-152)||(30358975-30359028)
chr6 (48-151)||(15603684-15603790)
chr6 (49-151)||(18675445-18675550)
chr6 (192-254)||(11680282-11680344)
chr6 (167-228)||(3228896-3228957)
chr6 (17-141)||(33516218-33516345)
chr6 (192-252)||(15060378-15060438)
chr6 (192-228)||(18617069-18617105)
chr6 (104-152)||(30359797-30359845)
chr6 (80-151)||(3228969-3229040)
chr6 (51-119)||(1831233-1831304)
chr6 (49-151)||(22012022-22012128)
chr6 (49-119)||(34043636-34043710)
[»] chr2 (24 HSPs)
chr2 (49-152)||(31548768-31548874)
chr2 (25-151)||(43672516-43672645)
chr2 (47-152)||(6883725-6883833)
chr2 (78-141)||(24484757-24484820)
chr2 (77-152)||(38565973-38566048)
chr2 (77-152)||(41302195-41302270)
chr2 (49-150)||(22575892-22575996)
chr2 (17-141)||(7879951-7880078)
chr2 (17-141)||(19678412-19678539)
chr2 (199-260)||(25622062-25622123)
chr2 (17-141)||(45277094-45277221)
chr2 (48-141)||(89923-90019)
chr2 (286-324)||(2644412-2644450)
chr2 (280-322)||(6317654-6317696)
chr2 (192-226)||(18581981-18582015)
chr2 (192-226)||(25471662-25471696)
chr2 (192-226)||(38697796-38697830)
chr2 (25-112)||(25415354-25415444)
chr2 (49-94)||(27861788-27861833)
chr2 (99-152)||(30387216-30387269)
chr2 (193-254)||(43672426-43672487)
chr2 (49-119)||(6221478-6221552)
chr2 (49-119)||(33015131-33015205)
chr2 (49-151)||(44322128-44322234)
[»] chr8 (14 HSPs)
chr8 (48-142)||(9381756-9381853)
chr8 (48-152)||(11648018-11648125)
chr8 (192-260)||(9137923-9137991)
chr8 (77-152)||(960620-960695)
chr8 (192-259)||(35824353-35824420)
chr8 (53-150)||(16729826-16729926)
chr8 (48-141)||(23231913-23232009)
chr8 (17-141)||(6927149-6927276)
chr8 (17-141)||(28516843-28516970)
chr8 (17-92)||(28509636-28509711)
chr8 (49-150)||(7263540-7263644)
chr8 (100-150)||(28374282-28374332)
chr8 (78-149)||(602039-602113)
chr8 (49-151)||(45117558-45117664)
[»] chr3 (17 HSPs)
chr3 (49-151)||(3917610-3917715)
chr3 (48-260)||(44879910-44880122)
chr3 (52-150)||(33100338-33100439)
chr3 (49-150)||(52448235-52448339)
chr3 (81-144)||(29714088-29714151)
chr3 (10-65)||(46948197-46948252)
chr3 (77-115)||(44663123-44663161)
chr3 (17-141)||(31884548-31884675)
chr3 (77-144)||(10992839-10992906)
chr3 (192-226)||(30377908-30377942)
chr3 (191-228)||(29714197-29714234)
chr3 (49-151)||(10994055-10994161)
chr3 (96-152)||(12893443-12893499)
chr3 (49-119)||(19157185-19157259)
chr3 (49-119)||(27941454-27941528)
chr3 (192-260)||(44662976-44663044)
chr3 (49-151)||(53076874-53076980)
[»] scaffold1364 (1 HSPs)
scaffold1364 (43-152)||(1193-1305)
[»] chr4 (19 HSPs)
chr4 (46-150)||(10142606-10142713)
chr4 (48-152)||(13957713-13957818)
chr4 (49-113)||(52460633-52460700)
chr4 (70-142)||(1842918-1842990)
chr4 (70-152)||(9896293-9896373)
chr4 (49-151)||(31915560-31915665)
chr4 (49-151)||(7413650-7413756)
chr4 (49-151)||(7459731-7459837)
chr4 (49-151)||(10094928-10095034)
chr4 (81-152)||(25201790-25201864)
chr4 (40-151)||(51758934-51759043)
chr4 (201-260)||(1842808-1842867)
chr4 (81-151)||(3665055-3665128)
chr4 (77-152)||(9921602-9921677)
chr4 (93-150)||(36213871-36213928)
chr4 (192-260)||(6261411-6261477)
chr4 (49-151)||(28803800-28803906)
chr4 (212-260)||(41508903-41508951)
chr4 (49-93)||(52459376-52459420)
[»] chr1 (17 HSPs)
chr1 (49-228)||(44310740-44310919)
chr1 (81-152)||(42055721-42055795)
chr1 (10-151)||(47397002-47397147)
chr1 (10-94)||(49228283-49228367)
chr1 (192-260)||(9023664-9023732)
chr1 (49-151)||(9023516-9023621)
chr1 (26-144)||(47559248-47559369)
chr1 (50-151)||(48596258-48596363)
chr1 (192-226)||(1346129-1346163)
chr1 (192-234)||(42055640-42055682)
chr1 (193-226)||(9957620-9957653)
chr1 (17-141)||(28945403-28945530)
chr1 (193-226)||(32178183-32178216)
chr1 (192-260)||(12028365-12028433)
chr1 (49-151)||(17967230-17967336)
chr1 (49-119)||(21906471-21906545)
chr1 (49-151)||(26465169-26465275)
[»] scaffold0385 (2 HSPs)
scaffold0385 (54-150)||(1065-1164)
scaffold0385 (192-259)||(1206-1275)
[»] scaffold0137 (1 HSPs)
scaffold0137 (49-151)||(21086-21190)
[»] scaffold0263 (1 HSPs)
scaffold0263 (43-110)||(18289-18359)
[»] scaffold0116 (1 HSPs)
scaffold0116 (78-141)||(41096-41159)
[»] scaffold0743 (1 HSPs)
scaffold0743 (17-141)||(2400-2527)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 39038295 - 39038046
Alignment:
Q  10 attattcttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctctactacggtattttatttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39038295 attattcttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctctactacggtattttatttt 39038196  T
Q  110 gttttagtgtctgtggagtatttgatgtattttcatatgttgcnnnnnnnnnnncatttatttgatagtgaaaagtggggggaaaaacgaaatgaagagg 209  Q
    |||||  |||||||| |||||||||||||||||||||||||||           |||||||||||||||||||||||  ||| |||||||||||||||||    
T  39038195 gttttgatgtctgtgaagtatttgatgtattttcatatgttgcaaaaaaaaaaacatttatttgatagtgaaaagtgttggg-aaaacgaaatgaagagg 39038097  T
Q  210 taataaaatcacaacaatggactaataaattttatgatctattatataagg 260  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39038096 taataaaatcacaacaatgaactaataaattttatgatctattatataagg 39038046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 21863945 - 21864057
Alignment:
Q  43 ttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttagtgtctgtggagtatttgatgtat 139  Q
    |||| |||||||||||||||| || |||||| | ||||||||||||||||   ||||||||||||||||||||||  ||| | |||||||||| || |||    
T  21863945 ttttgaggtgctaaaatttcactctacttcgcaggtgctattgttctctacttctacggtattttattttgttttgttgtttatggagtatttaatttat 21864044  T
Q  140 tttcatatgttgc 152  Q
    ||| | |||||||    
T  21864045 tttgagatgttgc 21864057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 8069958 - 8070085
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttt 113  Q
    |||||||| |||| |||||| |||| | || ||||||||||||||||||  |||||| |   ||||||||||||||   ||| |||||||||||| ||||    
T  8069958 ttagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtttacttcggagaagctattgttctctaatcctatggtattttatttagttt 8070057  T
Q  114 tagtgtctgtggagtatttgatgtattt 141  Q
    | || ||| ||||||||||||| |||||    
T  8070058 tggtttctatggagtatttgatttattt 8070085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 8113517 - 8113319
Alignment:
Q  48 aggtgctaaaatttcagtcaacttcgtaagtgctattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    ||||||||||||||||||  |||||| | ||| ||||||||| ||||   ||  |||||||||||||||| |||||| | |||||||  || ||||||||    
T  8113517 aggtgctaaaatttcagtgtacttcgcatgtgttattgttctatacttctacaatattttattttgttttggtgtctatagagtatta-atttattttca 8113419  T
Q  145 tatgttgcnnnnnnnnnnncatttatttgatagtgaaaagtggggggaaaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttat 244  Q
     |||||||           |||||||||| |||||||||  ||    ||||| ||| ||||||| |||||||||||||||||||  |||| |||||||||    
T  8113418 gatgttgccaaaaaaaaaacatttatttggtagtgaaaaacggaa--aaaaatgaattgaagagttaataaaatcacaacaatgagctaacaaattttat 8113321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 15995301 - 15995446
Alignment:
Q  10 attattcttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttct---ctactacggtattttat 106  Q
    |||||||| || || |||||||| ||||| |||||||||| |||||||||||||| | |||||| | || |||||| |||   || || |  | ||||||    
T  15995301 attattctcaggtgctaaaattttagtctttatttttcagatgctaaaatttcagcctacttcgcatgttctattgctctatgcttctgctattttttat 15995400  T
Q  107 tttgttttagtgtctgtggagtatttgatgtattttcatatgttgc 152  Q
    |||||||| || ||| | ||||||||||| |||||| | |||||||    
T  15995401 tttgttttggtttctattgagtatttgatttattttaagatgttgc 15995446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 13754207 - 13754303
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctac---tacggtattttattttgttttagtgtctgtggagtatttgatgtatttt 142  Q
    |||||||||||||||||| |||||| | |||||||| ||||||||   |||| ||||| |||||||||| |||| | | |||||||| || ||||||    
T  13754207 ggtgctaaaatttcagtctacttcgcatgtgctatttttctctacttgtacgatatttcattttgttttggtgtatatagagtatttaatttatttt 13754303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 35477989 - 35477885
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctac---tacggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||||||||||||||||| |||||| | |||||||| ||||||||   |||| ||||| |||||||||| |||| | |  ||||||| || ||||||||     
T  35477989 ggtgctaaaatttcagtctacttcggatgtgctatttttctctacttgtacgatatttcattttgttttggtgtatatatagtatttaatttattttcag 35477890  T
Q  146 atgtt 150  Q
    |||||    
T  35477889 atgtt 35477885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 48238834 - 48238961
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttt 113  Q
    |||||||| |||| |||||| || | | || ||||||||||||||||||| |||||| |   ||||||||||||||   ||| | |||||| ||| ||||    
T  48238834 ttagatgtcaaaaattcagtgtcaactatttaggtgctaaaatttcagtctacttcggagaagctattgttctctaatcctatgatattttgtttagttt 48238933  T
Q  114 tagtgtctgtggagtatttgatgtattt 141  Q
    | || ||| ||||||||||||| |||||    
T  48238934 tggtttctatggagtatttgatttattt 48238961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 4539953 - 4540027
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgt 119  Q
    |||||||||||||||||| |||||| | |||||||| |||||||   |||||||| |||||||||||||| ||||    
T  4539953 ggtgctaaaatttcagtctacttcgcatgtgctatttttctctacttctacggtatttttattttgttttggtgt 4540027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 18667460 - 18667558
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctac---tacggtattttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||||||| |||||| | |||||||| ||||||||   |||| ||||| ||||||||||  ||| | | |||||||| || ||||||||    
T  18667460 ggtgctaaaatttcagtctacttcgcatgtgctatttttctctacttgtacgatatttcattttgttttgatgtatatagagtatttaatttattttca 18667558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 9420916 - 9420983
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataag 259  Q
    ||||| ||||||||||  |||||||| |||||||||  ||||| |||  |||||||||||||||||||    
T  9420916 aaaaatgaaatgaagatctaataaaaacacaacaataaactaaaaaaaattatgatctattatataag 9420983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 3123750 - 3123690
Alignment:
Q  77 gtgctattgttctcta---ctacggtattttattttgttttagtgtctgtggagtatttga 134  Q
    ||||||||||| ||||   |||||||||||||||||||||| |||||| | ||||||||||    
T  3123750 gtgctattgttatctatttctacggtattttattttgttttggtgtctatagagtatttga 3123690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 5771272 - 5771326
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttatga 246  Q
    |||||| |||||||||| |||||||||||||||||||  |||| ||| |||||||    
T  5771272 aaaaacaaaatgaagagctaataaaatcacaacaatgagctaaaaaaatttatga 5771326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 19311630 - 19311534
Alignment:
Q  48 aggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttagtgtctgtggagtatttgatgtattt 141  Q
    ||||||||||||||||||| |||||| |   ||||||||||||||   ||| |||||||| ||| |||||  | ||| ||||||||||||| |||||    
T  19311630 aggtgctaaaatttcagtctacttcgcataagctattgttctctattcctatggtattttgtttagttttgatttctatggagtatttgatttattt 19311534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 6189122 - 6188995
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttt 113  Q
    |||||||| |||| |||||| || ||| || ||||||||||||||||||  |||||| |   ||| ||||||||||   ||| |||||||| ||| ||||    
T  6189122 ttagatgtcaaaaattcagtgtcgattatttaggtgctaaaatttcagtttacttcggagaagctgttgttctctaatcctatggtattttgtttagttt 6189023  T
Q  114 tagtgtctgtggagtatttgatgtattt 141  Q
    | || ||| | ||||||||||| |||||    
T  6189022 tggtttctatagagtatttgatttattt 6188995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 6195638 - 6195511
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttt 113  Q
    |||||||| |||| |||||| || ||| || ||||||||||||||||||  |||||| |   ||| ||||||||||   ||| |||||||| ||| ||||    
T  6195638 ttagatgtcaaaaattcagtgtcgattatttaggtgctaaaatttcagtttacttcggagaagctgttgttctctaatcctatggtattttgtttagttt 6195539  T
Q  114 tagtgtctgtggagtatttgatgtattt 141  Q
    | || ||| | ||||||||||| |||||    
T  6195538 tggtttctatagagtatttgatttattt 6195511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 12380268 - 12380301
Alignment:
Q  193 aaaacgaaatgaagaggtaataaaatcacaacaa 226  Q
    |||||||||||||||| |||||||||||||||||    
T  12380268 aaaacgaaatgaagagctaataaaatcacaacaa 12380301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 20394795 - 20394724
Alignment:
Q  51 tgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttagtgt 119  Q
    |||||||||||||||  |||||| | |||||||| |||||||   ||||| |||||||||||||||| ||||    
T  20394795 tgctaaaatttcagtatacttcgcatgtgctatttttctctacttctacgatattttattttgttttggtgt 20394724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 5120551 - 5120416
Alignment:
Q  10 attattcttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttct---ctactacggtattttat 106  Q
    ||||||||||  || |||||||||||| ||||||||||||||| ||||||||||||| |||| |||  ||||||||||||   || ||||||||||||||    
T  5120551 attattcttaagtgctaaaatttcagtttctatttttcaggtgttaaaatttcagtctactttgtatatgctattgttctatacttctacggtattttat 5120452  T
Q  107 tttgttttagtgtctgtggagtatttgatgtatttt 142  Q
    |||||||| |||| | ||||||||| ||| ||||||    
T  5120451 tttgttttggtgtttatggagtattggatttatttt 5120416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 29150689 - 29150794
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctac---tacggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||||||||||||||||| |||||| ||||| ||||| |||||||   ||||||||||||||||||||| || ||| || |||||||||| |||||| |     
T  29150689 ggtgctaaaatttcagtctacttcgcaagtgttattgctctctacttttacggtattttattttgttttggtatctatgaagtatttgatttatttttag 29150788  T
Q  146 atgttg 151  Q
    ||||||    
T  29150789 atgttg 29150794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 43171034 - 43170927
Alignment:
Q  48 aggtgctaaaatttcagtcaacttcgtaagtgctattgttct---ctactacggtattttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    ||||||||||||| ||||| |||||| | ||||||||||||    || ||||| |||||||||||||||| ||||||   ||||||||||| ||||||||    
T  43171034 aggtgctaaaattacagtctacttcgcatgtgctattgttccatgcttctacgatattttattttgttttggtgtctaaagagtatttgatttattttca 43170935  T
Q  145 tatgttgc 152  Q
     |||||||    
T  43170934 gatgttgc 43170927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 13820623 - 13820518
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||||||||||||||||| |||||  | ||| | ||||||||||||   |||||||||||||||||||| |||||| ||  ||||||||| | ||||||     
T  13820623 ggtgctaaaatttcagtctacttcacatgtgttgttgttctctacttctacggtattttattttgttttggtgtctatgaggtatttgatttgttttcag 13820524  T
Q  146 atgttg 151  Q
    ||||||    
T  13820523 atgttg 13820518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 13825966 - 13825865
Alignment:
Q  51 tgctaaaatttcagtcaacttcgtaagtgctattgttctctac---tacggtattttattttgttttagtgtctgtggagtatttgatgtattttcatat 147  Q
    |||||||||||||||| |||| | | ||| |||||||||||||   ||||||||||| ||||||||| ||||||||  |||||||||| |||||| | ||    
T  13825966 tgctaaaatttcagtctactttgcatgtgttattgttctctacttttacggtattttgttttgtttttgtgtctgt--agtatttgatttatttttagat 13825869  T
Q  148 gttg 151  Q
    ||||    
T  13825868 gttg 13825865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 26402327 - 26402439
Alignment:
Q  10 attattcttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttat 106  Q
    ||||||||||| ||  |||||||| |||||||||||| | ||||||||||||||||| | |  | | ||| |||||||| |||   ||||||||||||||    
T  26402327 attattcttaggtgcgaaaatttcggtctctattttttaagtgctaaaatttcagtctattatgcaggtgttattgttcgctacttctacggtattttat 26402426  T
Q  107 tttgttttagtgt 119  Q
    |||||||| ||||    
T  26402427 tttgttttggtgt 26402439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 16686720 - 16686642
Alignment:
Q  77 gtgctattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgttgc 152  Q
    ||||||||||||| ||||   |||||||||||||||||||| |||||| || ||||| |||| |||||||| |||||||    
T  16686720 gtgctattgttctatacttatacggtattttattttgttttggtgtctatgaagtatctgatttattttcagatgttgc 16686642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 13490482 - 13490587
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttct---ctactacggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||||||||||||||||| |||||| | |||||||| ||||   || |||||  ||||||||||||||| |||| | | |||||||| || ||||||||     
T  13490482 ggtgctaaaatttcagtctacttcgcatgtgctatttttctatacttctacgacattttattttgttttggtgtatatagagtatttaatttattttcag 13490581  T
Q  146 atgttg 151  Q
    ||||||    
T  13490582 atgttg 13490587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 20891139 - 20891038
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||||||||||||||||| |||||| | ||| || | |||| ||||   ||  |||||||||||||||| |||| ||| ||||||||||| |||||||||    
T  20891139 ggtgctaaaatttcagtctacttcgcatgtgataatattctttacttctacaatattttattttgttttggtgtgtgtagagtatttgatttattttcat 20891040  T
Q  146 at 147  Q
    ||    
T  20891039 at 20891038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 38491422 - 38491549
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttt 113  Q
    |||||||| |||| |||||| |||| | || ||||||||||||||||||| |||||| |   ||||||||||||||   |||  ||||||| ||| ||||    
T  38491422 ttagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtctacttcgaagaagctattgttctctaatcctatagtattttgtttagttt 38491521  T
Q  114 tagtgtctgtggagtatttgatgtattt 141  Q
    | || ||| || |||||||||| |||||    
T  38491522 tggtttctatgaagtatttgatttattt 38491549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 7850690 - 7850746
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcg 73  Q
    |||||||| |||| |||||| |||||| || ||||||||||||||||||| ||||||    
T  7850690 ttagatgtcaaaaattcagtgtctattatttaggtgctaaaatttcagtctacttcg 7850746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 23962942 - 23963048
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||||||| |||||  | |||||||| |||||||   |||||||| |||||||||||||| |||| | | || ||||| || ||||||||    
T  23962942 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgtatatagaatatttaatttattttca 23963041  T
Q  145 tatgttg 151  Q
     ||||||    
T  23963042 gatgttg 23963048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 5578620 - 5578515
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||||||||||||||||| |||| | |  ||||||| |||||||||   ||| |||||||||||||||| ||||   | |||||||| || ||||||||     
T  5578620 ggtgctaaaatttcagtctactttgcatatgctatttttctctacttttacgatattttattttgttttggtgtacatagagtatttaatttattttcag 5578521  T
Q  146 atgttg 151  Q
    ||||||    
T  5578520 atgttg 5578515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 37135206 - 37135275
Alignment:
Q  78 tgctattgttctctactac---ggtattttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    ||||||||||||||||| |   | |||||||| ||||||| |||||| ||||||||||||| ||||||||    
T  37135206 tgctattgttctctacttctaagatattttatgttgttttggtgtctatggagtatttgatttattttca 37135275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 16686600 - 16686546
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttatga 246  Q
    ||||||||||||||||| |||||||| |||||||||| | ||| ||| |||||||    
T  16686600 aaaaacgaaatgaagagctaataaaaacacaacaatgcattaaaaaaatttatga 16686546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 39537411 - 39537307
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||||||||||||||||  |||||| | |||||||| |||||||   ||| | |||||||||||||||| |||| | | || ||||| || ||||||||     
T  39537411 ggtgctaaaatttcagtttacttcgcatgtgctatttttctctacttctaagatattttattttgttttggtgtatatagaatatttaatttattttcag 39537312  T
Q  146 atgtt 150  Q
    |||||    
T  39537311 atgtt 39537307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 41870406 - 41870439
Alignment:
Q  193 aaaacgaaatgaagaggtaataaaatcacaacaa 226  Q
    |||||||||||||||| |||||||||||||||||    
T  41870406 aaaacgaaatgaagagctaataaaatcacaacaa 41870439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 42879830 - 42879897
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataagg 260  Q
    ||||||||||||||||| ||| |||| ||||||||||  |||| |||  |||||||||||||| |||||    
T  42879830 aaaaacgaaatgaagagctaaaaaaa-cacaacaatgagctaaaaaaaattatgatctattatgtaagg 42879897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 43170893 - 43170825
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataagg 260  Q
    ||||| ||| ||||||| ||||||||||||| |||||  |||| ||| |||||||| |||||| |||||    
T  43170893 aaaaatgaattgaagagttaataaaatcacatcaatgagctaacaaactttatgatgtattatgtaagg 43170825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 1659 - 1771
Alignment:
Q  43 ttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttagtgtctgtggagtatttgatgtat 139  Q
    |||| ||||||||||||||||||| ||||| |||||| ||||||||||||   |||||||||||||||||| |||  ||||| || ||| |||||| |||    
T  1659 ttttgaggtgctaaaatttcagtctacttcataagtgttattgttctctacttctacggtattttattttggtttgctgtctatgaagtgtttgatttat 1758  T
Q  140 tttcatatgttgc 152  Q
    ||||| |||||||    
T  1759 tttcagatgttgc 1771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 13758596 - 13758492
Alignment:
Q  50 gtgctaaaatttcagtcaacttcgtaagtgctattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtattttcata 146  Q
    |||||||||||| |||| |||||  | ||||||||||||||||||   ||||||||||||| |||||| |||||| | ||||||||||| ||||||||||    
T  13758596 gtgctaaaattttagtctacttcacatgtgctattgttctctacttctacggtattttattctgttttggtgtctatagagtatttgatttattttcata 13758497  T
Q  147 tgttg 151  Q
    |||||    
T  13758496 tgttg 13758492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 31130056 - 31130125
Alignment:
Q  77 gtgctattgttctctactacggtattttattttgttttagtgtctgtggagtatttgatgtattttcata 146  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||| |||  |||||||||| ||||||||||    
T  31130056 gtgctattgttctcttctaaggttttttattttgttttagtgtttgtaaagtatttgatttattttcata 31130125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 15060263 - 15060340
Alignment:
Q  77 gtgctattgttctctactac---ggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgttg 151  Q
    |||||||||||||||||| |   |||||||||||||||||| |||||| | ||||||||||| |||||||| ||||||    
T  15060263 gtgctattgttctctacttctatggtattttattttgttttggtgtctatagagtatttgatttattttcagatgttg 15060340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 20990531 - 20990635
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctac---tacggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||||||||||||||||| |||||| | |||||||| ||||||||   |||| ||||| |||||||||| |||| | | |||||||| || ||||||||     
T  20990531 ggtgctaaaatttcagtctacttcgcatgtgctatttttctctacttgtacgatatttcattttgttttggtgtatatagagtatttaatttattttcag 20990630  T
Q  146 atgtt 150  Q
    |||||    
T  20990631 atgtt 20990635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 22524995 - 22525069
Alignment:
Q  78 tgctattgttctctactacggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgttgc 152  Q
    |||||||||||||| ||| ||||||||||||||||||  ||||| |  |||||||||| |||||||| |||||||    
T  22524995 tgctattgttctcttctatggtattttattttgttttgatgtctataaagtatttgatttattttcagatgttgc 22525069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 142
Target Start/End: Original strand, 26817715 - 26817807
Alignment:
Q  53 ctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttagtgtctgtggagtatttgatgtatttt 142  Q
    ||||||||||| || |||||| | ||||||||||||||||   ||||| ||||||||||||||| ||||||| |  |||||||||| ||||||    
T  26817715 ctaaaatttcactctacttcgcatgtgctattgttctctacttctacgatattttattttgtttgagtgtctatacagtatttgatttatttt 26817807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 30358975 - 30359028
Alignment:
Q  99 tattttattttgttttagtgtctgtggagtatttgatgtattttcatatgttgc 152  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||| |||||||    
T  30358975 tattatattttgttttagtgtctatggagtatttgatttattttcagatgttgc 30359028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 15603790 - 15603684
Alignment:
Q  48 aggtgctaaaatttcagtcaacttcgtaagtgctattgttctctactac---ggtattttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||||| |  |||| | | |||||||||||||||||| |   | ||||||||||||||||| ||| | || |||||||||| ||||||||    
T  15603790 aggtgctaaaatttcaatttactttgcaggtgctattgttctctacttctatgatattttattttgttttaatgtttatgaagtatttgatttattttca 15603691  T
Q  145 tatgttg 151  Q
     ||||||    
T  15603690 gatgttg 15603684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 18675445 - 18675550
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||||||||||||||||| |||||| | ||| |||| |||||||   || || |||||||||||||||| |||| | | |||||||| || ||||||||     
T  18675445 ggtgctaaaatttcagtctacttcgcatgtgttatttttctctactcctgcgatattttattttgttttggtgtatatagagtatttaatttattttcag 18675544  T
Q  146 atgttg 151  Q
    ||||||    
T  18675545 atgttg 18675550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 11680344 - 11680282
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttatgatctattat 254  Q
    ||||| ||||||||||| |||||||||||||||||||  |||| |||||||| ||| ||||||    
T  11680344 aaaaatgaaatgaagagttaataaaatcacaacaatgagctaacaaattttacgatgtattat 11680282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 3228957 - 3228896
Alignment:
Q  167 ttatttgatagtgaaaagtggggggaaaaacgaaatgaagaggtaataaaatcacaacaatg 228  Q
    ||||||| |||||||||| |||   |||||| |||||||||| |||||||||||||||||||    
T  3228957 ttatttggtagtgaaaagcgggaaaaaaaacaaaatgaagagctaataaaatcacaacaatg 3228896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 33516345 - 33516218
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttt 113  Q
    |||||||| |||| |||||| |||| | || ||||||||||||||||||| |||||| |   ||||||||||||||   |||  ||||||| ||| ||||    
T  33516345 ttagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgttctctaatcctatagtattttgtttagttt 33516246  T
Q  114 tagtgtctgtggagtatttgatgtattt 141  Q
    | || ||| || |||||||||| |||||    
T  33516245 tggtttctatgaagtatttgatttattt 33516218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 15060378 - 15060438
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttatgatctatt 252  Q
    ||||||||||| ||||| |||||||| ||||||||||  |||| |||||||||||| ||||    
T  15060378 aaaaacgaaataaagagctaataaaaacacaacaatgagctaaaaaattttatgatgtatt 15060438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 18617069 - 18617105
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatg 228  Q
    ||||||||||||||||| |||||||||||||||||||    
T  18617069 aaaaacgaaatgaagagctaataaaatcacaacaatg 18617105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 30359797 - 30359845
Alignment:
Q  104 tattttgttttagtgtctgtggagtatttgatgtattttcatatgttgc 152  Q
    |||||||||||||||||| |||||||||| || |||||||| |||||||    
T  30359797 tattttgttttagtgtctatggagtattttatttattttcagatgttgc 30359845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 3229040 - 3228969
Alignment:
Q  80 ctattgttctctactacggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgttg 151  Q
    |||||||||||| |||||||||||||||||||||| || | | |   ||||||||| |||||||| ||||||    
T  3229040 ctattgttctcttctacggtattttattttgttttggtatttataatgtatttgatttattttcaaatgttg 3228969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 1831233 - 1831304
Alignment:
Q  51 tgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttagtgt 119  Q
    |||||||||||||||| |||||| |  || ||||||||||||   || ||||||||||||||||||| ||||    
T  1831233 tgctaaaatttcagtctacttcgcagatgttattgttctctacttctgcggtattttattttgttttggtgt 1831304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 22012128 - 22012022
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||||||| |||||  |  ||||||| |||||||   |||||||| |||||||||||||| |||| | | || ||||| || ||||||||    
T  22012128 ggtgctaaaatttcagtctacttcacatatgctatttttctctacttctacggtatttttattttgttttggtgtatatagaatatttaatttattttca 22012029  T
Q  145 tatgttg 151  Q
     ||||||    
T  22012028 gatgttg 22012022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 34043636 - 34043710
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgt 119  Q
    |||||||||||||||||| |||||  | |||||||| |||||||   |||||||| |||||||||||||| ||||    
T  34043636 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgt 34043710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 31548874 - 31548768
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||| ||||||||||||| |||||| ||||||||||||||||||   ||| | |||||||||||||||| |||| | |  |||||||||| |||||||||    
T  31548874 ggtggtaaaatttcagtctacttcgcaagtgctattgttctctacttctatgatattttattttgttttggtgtttataaagtatttgatttattttcat 31548775  T
Q  146 atgttgc 152  Q
    |||||||    
T  31548774 atgttgc 31548768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 43672645 - 43672516
Alignment:
Q  25 taaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctct---actacggtattttattttgttttagtgtct 121  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| | | |||||| ||||| ||   ||| || | |||| ||||| |||||| |||    
T  43672645 taaaatttcagtctctatttttccggtgctaaaatttcagtctactttgcatgtgctactgttcgctgcaacttcgattttttgttttggtttagtttct 43672546  T
Q  122 gtggagtatttgatgtattttcatatgttg 151  Q
     | ||||||||||| |||||| | ||||||    
T  43672545 attgagtatttgatttattttaagatgttg 43672516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 152
Target Start/End: Original strand, 6883725 - 6883833
Alignment:
Q  47 caggtgctaaaatttcagtcaacttcgtaagtgctattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtattttc 143  Q
    ||||||||||||||| ||||   ||| || || |||||||||||||||   ||| ||| |||||||||||| |||||| ||||||||||||| |||||||    
T  6883725 caggtgctaaaattttagtctgtttcataggtactattgttctctacttctacgatatcttattttgttttggtgtctatggagtatttgatttattttc 6883824  T
Q  144 atatgttgc 152  Q
    | |||||||    
T  6883825 agatgttgc 6883833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 24484757 - 24484820
Alignment:
Q  78 tgctattgttctctactacggtattttattttgttttagtgtctgtggagtatttgatgtattt 141  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |  |||||||||| |||||    
T  24484757 tgctattgttctcttctacggtattttattttgttttggtgtctataaagtatttgatttattt 24484820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 38566048 - 38565973
Alignment:
Q  77 gtgctattgttctctactacggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgttgc 152  Q
    |||||||| |||||| |||||||||||| ||||||||| |||||| |  |||||||||| |||||||| |||||||    
T  38566048 gtgctattattctcttctacggtattttgttttgttttggtgtctataaagtatttgatttattttcagatgttgc 38565973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 41302270 - 41302195
Alignment:
Q  77 gtgctattgttctctactacggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgttgc 152  Q
    ||||||||||||||| ||||||||||||| |||||||| |||||| |  ||| |||||| |||||||| |||||||    
T  41302270 gtgctattgttctcttctacggtattttaatttgttttggtgtctataaagtttttgatttattttcagatgttgc 41302195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 22575996 - 22575892
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctac---tacggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    ||||||||||||| |||  |||| | | |||||||| ||||||||   |||||||||||||||||||||  ||| | | |||||||| || |||||||||    
T  22575996 ggtgctaaaattttagtttactttgaatgtgctatttttctctacatctacggtattttattttgttttgttgtatatagagtatttaatttattttcat 22575897  T
Q  146 atgtt 150  Q
    |||||    
T  22575896 atgtt 22575892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 7880078 - 7879951
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttt 113  Q
    |||||||| |||| |||||| |||| | || ||||||||||||||||||| |||||| |   ||||||||||||||   |||  ||||||| ||| ||||    
T  7880078 ttagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgttctctaatcctatagtattttgtttagttt 7879979  T
Q  114 tagtgtctgtggagtatttgatgtattt 141  Q
    | || ||| || |||||||||| |||||    
T  7879978 tggtttctatgaagtatttgatttattt 7879951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 19678412 - 19678539
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttt 113  Q
    |||||||| |||| |||||| |||| | || ||||||||||||||||||   ||||| |   ||||||||||||||   ||| |||||||| ||| ||||    
T  19678412 ttagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtttgcttcggagaagctattgttctctaatcctatggtattttgtttagttt 19678511  T
Q  114 tagtgtctgtggagtatttgatgtattt 141  Q
    | || ||| ||||||||||||| |||||    
T  19678512 tggtttctatggagtatttgatttattt 19678539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 25622062 - 25622123
Alignment:
Q  199 aaatgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataagg 260  Q
    |||||||||  ||||||||||||||||||  ||||| |||||||||||| |||||| |||||    
T  25622062 aaatgaagaattaataaaatcacaacaataaactaacaaattttatgatgtattatgtaagg 25622123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 45277221 - 45277094
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttt 113  Q
    |||||||| |||| |||||| |||| | || ||||||||||||||||||| |||||| |   ||||||||||||||   |||  ||||||| ||| ||||    
T  45277221 ttagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgttctctaatcctatagtattttgtttagttt 45277122  T
Q  114 tagtgtctgtggagtatttgatgtattt 141  Q
    | || ||| || |||||||||| |||||    
T  45277121 tggtttctatgaagtatttgatttattt 45277094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 90019 - 89923
Alignment:
Q  48 aggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttagtgtctgtggagtatttgatgtattt 141  Q
    ||||||||||||||||||| |||||| |   ||||||||||||||   ||| |||||||| ||| |||||  | ||| ||||||||||||| |||||    
T  90019 aggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattt 89923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 2644412 - 2644450
Alignment:
Q  286 gatatcatccgtatgcaactgtaaagactaatctctcaa 324  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  2644412 gatatcttccgtatgaaactgtaaagactaatctctcaa 2644450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 6317654 - 6317696
Alignment:
Q  280 aaactggatatcatccgtatgcaactgtaaagactaatctctc 322  Q
    |||||||||||| |||| | |||||||||||||||||||||||    
T  6317654 aaactggatatcctccgcacgcaactgtaaagactaatctctc 6317696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 18582015 - 18581981
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaa 226  Q
    ||||||||||||||||| |||||||||||||||||    
T  18582015 aaaaacgaaatgaagagctaataaaatcacaacaa 18581981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 25471696 - 25471662
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaa 226  Q
    ||||||||||||||||| |||||||||||||||||    
T  25471696 aaaaacgaaatgaagagctaataaaatcacaacaa 25471662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 38697796 - 38697830
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaa 226  Q
    ||||||||||||||||| |||||||||||||||||    
T  38697796 aaaaacgaaatgaagagctaataaaatcacaacaa 38697830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 25415444 - 25415354
Alignment:
Q  25 taaaatttcagtctctattttt-caggtgctaaaatttcagtcaacttcgtaagtgctattgttctctact---acggtattttattttgtt 112  Q
    ||||||||||  |||||||||| | |||||||||||| |||| | |||||||  |||||||||||| ||||   ||||||||||||||||||    
T  25415444 taaaatttcaacctctattttttcgggtgctaaaattccagtta-cttcgtagatgctattgttctatacttttacggtattttattttgtt 25415354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 27861833 - 27861788
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctact 94  Q
    |||||||||||||||||| |||||| | |||||||| |||||||||    
T  27861833 ggtgctaaaatttcagtctacttcgcatgtgctatttttctctact 27861788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 30387216 - 30387269
Alignment:
Q  99 tattttattttgttttagtgtctgtggagtatttgatgtattttcatatgttgc 152  Q
    ||||||||||| ||||||| | | ||||||||||||| |||||| |||||||||    
T  30387216 tattttattttattttagtttttatggagtatttgatttatttttatatgttgc 30387269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 43672487 - 43672426
Alignment:
Q  193 aaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttatgatctattat 254  Q
    |||| ||||||||||| ||||||||||||||||  | ||||| ||| |||||||| ||||||    
T  43672487 aaaatgaaatgaagagctaataaaatcacaacatagaactaaaaaagtttatgatgtattat 43672426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 6221478 - 6221552
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgt 119  Q
    |||||||||||||||||| |||||  | |||||||| |||||||   |||||||| |||||||||||||| ||||    
T  6221478 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgt 6221552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 33015205 - 33015131
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgt 119  Q
    |||||||||||||||||| |||||  | |||||||| |||||||   |||||||| |||||||||||||| ||||    
T  33015205 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgt 33015131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 44322234 - 44322128
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||||||| |||||  |  ||||||| |||||||   |||||||| |||||||||||||| |||| | | || ||||| || ||||||||    
T  44322234 ggtgctaaaatttcagtctacttcacatatgctatttttctctacttctacggtatttttattttgttttggtgtatatagaatatttaatttattttca 44322135  T
Q  145 tatgttg 151  Q
     ||||||    
T  44322134 gatgttg 44322128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 9381853 - 9381756
Alignment:
Q  48 aggtgctaaaatttcagtcaacttcgtaagtgctattgttct---ctactacggtattttattttgttttagtgtctgtggagtatttgatgtatttt 142  Q
    ||||||||||||||||||| |||||| | |||||||||||||   || ||||| || ||||||||||||| |||||| ||||||||||||| ||||||    
T  9381853 aggtgctaaaatttcagtctacttcgcatgtgctattgttctatacttctacgatactttattttgttttggtgtctatggagtatttgatttatttt 9381756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 11648125 - 11648018
Alignment:
Q  48 aggtgctaaaatttcagtcaacttcgtaagtgctattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    ||||||||||||||||||| |||||| | ||| |||||||| |||||   |  ||||||||||||||||| |||||| || ||||||||||  |||| ||    
T  11648125 aggtgctaaaatttcagtctacttcgcatgtgttattgttcactacttttatagtattttattttgtttttgtgtctatgaagtatttgattgatttaca 11648026  T
Q  145 tatgttgc 152  Q
     |||||||    
T  11648025 gatgttgc 11648018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 9137923 - 9137991
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataagg 260  Q
    |||||| |||||||||| ||||||||||||||||||| ||||| ||| ||| |||  ||||||||||||    
T  9137923 aaaaacaaaatgaagagttaataaaatcacaacaatgaactaaaaaaatttgtgaagtattatataagg 9137991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 960695 - 960620
Alignment:
Q  77 gtgctattgttctctactacggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgttgc 152  Q
    ||||||||||||||||||| ||||||||||||  ||  ||||| | || | |||||||| ||||||||||||||||    
T  960695 gtgctattgttctctactaaggtattttatttcattccagtgtttatgaaatatttgatttattttcatatgttgc 960620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 35824353 - 35824420
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataag 259  Q
    ||||| |||||||| || |||||||||||||||||||  |||| ||||||||| || |||||||||||    
T  35824353 aaaaatgaaatgaaaagttaataaaatcacaacaatgagctaacaaattttataatgtattatataag 35824420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 16729826 - 16729926
Alignment:
Q  53 ctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgt 149  Q
    |||||||||||||| |||||| | |||||||| |||||||   ||||| |||||||||||||||| ||||   | |||||||| || |||||||| ||||    
T  16729826 ctaaaatttcagtctacttcgcatgtgctatttttctctacttctacgatattttattttgttttggtgtacatagagtatttaatttattttcagatgt 16729925  T
Q  150 t 150  Q
    |    
T  16729926 t 16729926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 23232009 - 23231913
Alignment:
Q  48 aggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttagtgtctgtggagtatttgatgtattt 141  Q
    |||| |||||||||||||  |||||||| ||| ||||||||||||   ||||||||||||||||| |||| |||||  || | |||||||| |||||    
T  23232009 aggtactaaaatttcagtatacttcgtaggtgttattgttctctacttctacggtattttattttattttggtgtcaatgaaatatttgatttattt 23231913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 6927276 - 6927149
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttt 113  Q
    |||||||| |||| |||||| |||| | || ||||||||||||||||||| |||||| |   ||||||||||||||   |||  ||||||| ||| ||||    
T  6927276 ttagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgttctctaatcctatagtattttgtttagttt 6927177  T
Q  114 tagtgtctgtggagtatttgatgtattt 141  Q
    | || ||| || |||||||||| |||||    
T  6927176 tggtttctatgaagtatttgatttattt 6927149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 28516843 - 28516970
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttt 113  Q
    |||||||| |||| |||||| |||| | || ||||||||||||||||||| |||||| |   ||||||||||||||   |||  ||||||| ||| ||||    
T  28516843 ttagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgttctctaatcctatagtattttgtttagttt 28516942  T
Q  114 tagtgtctgtggagtatttgatgtattt 141  Q
    | || ||| || |||||||||| |||||    
T  28516943 tggtttctatgaagtatttgatttattt 28516970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 28509636 - 28509711
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta 92  Q
    |||||||| |||| |||||| |||| | || ||||||||||||||||||| |||||| |   ||||||||||||||    
T  28509636 ttagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgttctcta 28509711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 7263644 - 7263540
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctac---tacggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    ||||||||||||||||||  ||||| | |||||||| ||||||||   |||| ||||| |||||||||| |||| | |  ||||||| || ||||||||     
T  7263644 ggtgctaaaatttcagtctgcttcggatgtgctatttttctctacttgtacgatatttcattttgttttggtgtatatatagtatttaatttattttcag 7263545  T
Q  146 atgtt 150  Q
    |||||    
T  7263544 atgtt 7263540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 28374332 - 28374282
Alignment:
Q  100 attttattttgttttagtgtctgtggagtatttgatgtattttcatatgtt 150  Q
    ||||||||||||||| |||||| || |||||||||| |||||||| |||||    
T  28374332 attttattttgttttggtgtctatgaagtatttgatttattttcagatgtt 28374282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 602113 - 602039
Alignment:
Q  78 tgctattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgt 149  Q
    |||||||||||||||||   ||  ||||||||||||||||  ||||| || |||||||||| |||||||| ||||    
T  602113 tgctattgttctctacttcaacaatattttattttgttttgttgtctatgaagtatttgatttattttcagatgt 602039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 45117558 - 45117664
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||||||| |||||| |  ||||||| || ||||   |||||||| |||||||||||||| |||| | | || ||||| || ||||||||    
T  45117558 ggtgctaaaatttcagtctacttcgcatttgctatttttttctacttctacggtatttttattttgttttggtgtatatagaatatttaatttattttca 45117657  T
Q  145 tatgttg 151  Q
     ||||||    
T  45117658 gatgttg 45117664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 3917715 - 3917610
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctacta---cggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||||||||||||| ||| |||||||| |||||||||||||| |||    ||||||||||||||||||| |||||  | ||||||||||| ||||||||     
T  3917715 ggtgctaaaatttcggtctacttcgtaggtgctattgttctcaacttttgcggtattttattttgttttggtgtcaatagagtatttgatttattttcaa 3917616  T
Q  146 atgttg 151  Q
    ||||||    
T  3917615 atgttg 3917610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 260
Target Start/End: Original strand, 44879910 - 44880122
Alignment:
Q  48 aggtgctaaaatttcagtcaacttcgtaagtgctattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||| |||| |||||| | ||| ||||||||| ||||   ||  |||||||||||||||| ||||||  | |||||||||| ||| ||||    
T  44879910 aggtgctaaaattttagtctacttcgcatgtgttattgttctatacttctacaatattttattttgttttggtgtctaagaagtatttgatttatattca 44880009  T
Q  145 tatgttgcnnnnnnnnnnncatttatttgatagtgaaaagtggggggaaaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttat 244  Q
     |||||||            ||||||||| ||||||||||||||   | |||  |||||||||| ||||||||| ||||||||| ||||| |||||||||    
T  44880010 gatgttgcttaaaaaaat--atttatttggtagtgaaaagtgggaa-acaaataaaatgaagagttaataaaattacaacaatgaactaacaaattttat 44880106  T
Q  245 gatctattatataagg 260  Q
    ||| |||||| |||||    
T  44880107 gatgtattatgtaagg 44880122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 33100439 - 33100338
Alignment:
Q  52 gctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatg 148  Q
    ||||||||||||||| |||||| | ||| ||||||||||||   ||| || ||||||||||||||| |||||| | ||||||||||| |||||||| |||    
T  33100439 gctaaaatttcagtctacttcgcatgtgttattgttctctatttctaaggcattttattttgttttggtgtctatagagtatttgatttattttcaaatg 33100340  T
Q  149 tt 150  Q
    ||    
T  33100339 tt 33100338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 52448235 - 52448339
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctac---tacggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||||||||||||||||| |||||| | |||||||| ||||||||   |||| ||||| |||||||||| |||| | | |||||||| || ||||||||     
T  52448235 ggtgctaaaatttcagtctacttcgcatgtgctatttttctctacttgtacgatatttcattttgttttggtgtatatagagtatttaatttattttcag 52448334  T
Q  146 atgtt 150  Q
    |||||    
T  52448335 atgtt 52448339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 29714088 - 29714151
Alignment:
Q  81 tattgttctctactacggtattttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    ||||||||||| ||||||||||||| |||||||| |||||| |  |||||||||| ||||||||    
T  29714088 tattgttctcttctacggtattttagtttgttttggtgtctataaagtatttgatttattttca 29714151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 46948197 - 46948252
Alignment:
Q  10 attattcttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagt 65  Q
    ||||||||| | ||||||||||| ||||||||||||| || |||||||||||||||    
T  46948197 attattctttggtgttaaaattttagtctctattttttagatgctaaaatttcagt 46948252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 44663161 - 44663123
Alignment:
Q  77 gtgctattgttctctactacggtattttattttgtttta 115  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  44663161 gtgctattgttctcttctacggtattttattttgtttta 44663123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 31884675 - 31884548
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttt 113  Q
    |||||||| |||| |||||| || | | || ||||||||||||||||||  |||||| |   ||||||||||||||   ||| |||||||| ||| ||||    
T  31884675 ttagatgtcaaaaattcagtgtcgactatttaggtgctaaaatttcagtttacttcggagaagctattgttctctaatcctatggtattttgtttagttt 31884576  T
Q  114 tagtgtctgtggagtatttgatgtattt 141  Q
    | || ||| ||||||||||||| |||||    
T  31884575 tggtttctatggagtatttgatttattt 31884548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 10992906 - 10992839
Alignment:
Q  77 gtgctattgttctctactacggtattttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||||  ||||||| ||||||||||||| |||||| |  | |||||||| ||||||||    
T  10992906 gtgctattgttctcttttacggtactttattttgttttggtgtctataaaatatttgatttattttca 10992839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 30377908 - 30377942
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaa 226  Q
    ||||||||||||||||| |||||||||||||||||    
T  30377908 aaaaacgaaatgaagagctaataaaatcacaacaa 30377942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 29714197 - 29714234
Alignment:
Q  191 gaaaaacgaaatgaagaggtaataaaatcacaacaatg 228  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  29714197 gaaaaacaaaatgaagagctaataaaatcacaacaatg 29714234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 10994161 - 10994055
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||||||| |||||| |  ||||||| || ||||   |||||||| |||||||||||||| |||| | | || ||||| || ||||||||    
T  10994161 ggtgctaaaatttcagtctacttcgcatttgctatttttttctacttctacggtatttttattttgttttggtgtatatagaatatttaatttattttca 10994062  T
Q  145 tatgttg 151  Q
     ||||||    
T  10994061 gatgttg 10994055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 12893443 - 12893499
Alignment:
Q  96 cggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgttgc 152  Q
    ||||||||||| || |||| |||| | | ||||||||||| ||||||||||||||||    
T  12893443 cggtattttatattattttggtgtatatagagtatttgatttattttcatatgttgc 12893499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 19157185 - 19157259
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgt 119  Q
    |||||||||||||||||| |||||  | |||||||| |||||||   |||||||| |||||||||||||| ||||    
T  19157185 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgt 19157259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 27941528 - 27941454
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgt 119  Q
    |||||||||||||||||| |||||  | |||||||| |||||||   |||||||| |||||||||||||| ||||    
T  27941528 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgt 27941454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 44663044 - 44662976
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataagg 260  Q
    |||||| ||| |||||| |||||||||||||||||||  |||| |||  ||| ||| ||||||||||||    
T  44663044 aaaaacaaaaggaagagctaataaaatcacaacaatgagctaaaaaaaattacgatgtattatataagg 44662976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 53076980 - 53076874
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||||||| |||||  | |||||||| |||||||   || ||||| |||||||||||||| |||| | | || ||||| || ||||||||    
T  53076980 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttcttcggtatttttattttgttttggtgtatatagaatatttaatttattttca 53076881  T
Q  145 tatgttg 151  Q
     ||||||    
T  53076880 gatgttg 53076874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1364 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1364
Description:

Target: scaffold1364; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 1193 - 1305
Alignment:
Q  43 ttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttagtgtctgtggagtatttgatgtat 139  Q
    |||| ||||||| |||||||||||||||||| ||||| ||||||| ||||   |||||||||||||||||| |||  ||||| || ||| |||||| |||    
T  1193 ttttgaggtgctgaaatttcagtcaacttcgcaagtgttattgttttctacttctacggtattttattttggtttgatgtctatgaagtgtttgatttat 1292  T
Q  140 tttcatatgttgc 152  Q
    ||||| |||||||    
T  1293 tttcagatgttgc 1305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 10142606 - 10142713
Alignment:
Q  46 tcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtatttt 142  Q
    ||||||||||||||||||||| |||||  | ||||||||||||| ||||   |||  ||||||||||||||| |||||| || |||||||||| ||||||    
T  10142606 tcaggtgctaaaatttcagtctacttcacatgtgctattgttctatacttctacgacattttattttgttttggtgtctatgcagtatttgatttatttt 10142705  T
Q  143 catatgtt 150  Q
    || |||||    
T  10142706 caaatgtt 10142713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 13957713 - 13957818
Alignment:
Q  48 aggtgctaaaatttcagtcaacttcgtaagtgctattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    ||||||| ||||||||||| |||| | | ||||||||||||| ||||   ||| |||||||||||||||| ||  || | ||||||||||| ||||||||    
T  13957713 aggtgctcaaatttcagtctactttgcacgtgctattgttctatacttctacgatattttattttgttttggt--ctttagagtatttgatttattttca 13957810  T
Q  145 tatgttgc 152  Q
    ||||||||    
T  13957811 tatgttgc 13957818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 52460633 - 52460700
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttt 113  Q
    |||||||||||||||||| |||||| | ||| ||||||||||||   |||||||||||||||||||||    
T  52460633 ggtgctaaaatttcagtctacttcgcatgtgttattgttctctacttctacggtattttattttgttt 52460700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 1842990 - 1842918
Alignment:
Q  70 ttcgtaagtgctattgttctctactacggtattttattttgttttagtgtctgtggagtatttgatgtatttt 142  Q
    |||||||||||||||||||| |  || |||||||||||||||||| |||||| |  |||||||||| ||||||    
T  1842990 ttcgtaagtgctattgttcttttatatggtattttattttgttttggtgtctataaagtatttgatttatttt 1842918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 9896373 - 9896293
Alignment:
Q  70 ttcgtaagtgctattgttctctactacggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgttgc 152  Q
    |||| ||||| |||||||||||  ||||||||||||||||||||| |||||  |  |||||||||| |||||||| |||||||    
T  9896373 ttcgcaagtgttattgttctcttatacggtattttattttgttttggtgtc--taaagtatttgatttattttcaaatgttgc 9896293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 31915560 - 31915665
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctactac---ggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||||||||||||||||| ||||   | ||||||||||| |||||| |   |||||||||||||||||| |||| | | | ||||||||| ||||||||     
T  31915560 ggtgctaaaatttcagtctacttatcatgtgctattgttgtctacttctatggtattttattttgttttggtgtttatagtgtatttgatttattttcag 31915659  T
Q  146 atgttg 151  Q
    ||||||    
T  31915660 atgttg 31915665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 7413756 - 7413650
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||||||| |||||  | |||||||| |||||||   |||||||| |||||||||||||| |||| | | || ||||| || ||||||||    
T  7413756 ggtgctaaaatttcagtctacttcacatgtgctatttttctctatttctacggtatttttattttgttttggtgtatatagaatatttaatttattttca 7413657  T
Q  145 tatgttg 151  Q
     ||||||    
T  7413656 gatgttg 7413650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 7459837 - 7459731
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||||||| |||||  | |||||||| |||||||   |||||||| |||||||||||||| |||| | | || ||||| || ||||||||    
T  7459837 ggtgctaaaatttcagtctacttcacatgtgctatttttctctatttctacggtatttttattttgttttggtgtatatagaatatttaatttattttca 7459738  T
Q  145 tatgttg 151  Q
     ||||||    
T  7459737 gatgttg 7459731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 10095034 - 10094928
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||||||| |||||  | |||||||| |||||||   |||||||| |||||||||||||| |||| | | || ||||| || ||||||||    
T  10095034 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgtgtatagaatatttaatttattttca 10094935  T
Q  145 tatgttg 151  Q
     ||||||    
T  10094934 gatgttg 10094928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 25201790 - 25201864
Alignment:
Q  81 tattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgttgc 152  Q
    ||||||||||||||   |||||||||||| |||| || |||||| ||||||||||||| |||||| | |||||||    
T  25201790 tattgttctctacttctacggtattttatcttgtgttggtgtctatggagtatttgatttatttttagatgttgc 25201864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 51758934 - 51759043
Alignment:
Q  40 tatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttct---ctactacggtattttattttgttttagtgtctgtggagtatttgatg 136  Q
    |||||||||||||||||||||| | || |||||| | |||||||||||||   || ||||  |||||||||||||     |||||  ||||||||||||     
T  51758934 tatttttcaggtgctaaaattttaatctacttcgcatgtgctattgttctggacttctacaatattttattttgt-----tgtctaaggagtatttgatt 51759028  T
Q  137 tattttcatatgttg 151  Q
    |||||||| ||||||    
T  51759029 tattttcagatgttg 51759043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 1842867 - 1842808
Alignment:
Q  201 atgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataagg 260  Q
    |||||||| ||||||||||||||||||| ||||| |||  ||||||  ||||||||||||    
T  1842867 atgaagagctaataaaatcacaacaatgaactaaaaaaaattatgacgtattatataagg 1842808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 3665128 - 3665055
Alignment:
Q  81 tattgttctctactac---ggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgttg 151  Q
    |||||||||||||| |   |||||||||||||||||| |||||| |  |||||||||| |||||||| ||||||    
T  3665128 tattgttctctacttctatggtattttattttgttttggtgtctatatagtatttgatttattttcagatgttg 3665055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 9921677 - 9921602
Alignment:
Q  77 gtgctattgttctctactacggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgttgc 152  Q
    ||||||||||||| | ||||  ||||||||||| |||| |||||| |  |||||||||| |||||||| |||||||    
T  9921677 gtgctattgttcttttctacaatattttattttattttggtgtctatcaagtatttgatttattttcagatgttgc 9921602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 36213871 - 36213928
Alignment:
Q  93 ctacggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgtt 150  Q
    |||||||||||||||||||||| |||| | | |||||||| || |||||||| |||||    
T  36213871 ctacggtattttattttgttttggtgtttatagagtatttaatttattttcagatgtt 36213928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 6261477 - 6261411
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataagg 260  Q
    ||||||||||||||||| ||| |||| |||||||||| ||||| |||  |||||||||||||| |||||    
T  6261477 aaaaacgaaatgaagagctaa-aaaaacacaacaatgaactaa-aaaaattatgatctattatgtaagg 6261411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 28803906 - 28803800
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||||||| |||||| |  ||||||| || ||||   |||||||| |||||||||||||| |||| | | || ||||| || ||||||||    
T  28803906 ggtgctaaaatttcagtctacttcgcatttgctatttttttctacttctacggtatttttattttgttttggtgtatatagaatatttaatttattttca 28803807  T
Q  145 tatgttg 151  Q
     ||||||    
T  28803806 gatgttg 28803800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 41508951 - 41508903
Alignment:
Q  212 ataaaatcacaacaatggactaataaattttatgatctattatataagg 260  Q
    ||||||||||||||||| ||||| ||| |||||||| ||| ||||||||    
T  41508951 ataaaatcacaacaatgaactaaaaaaatttatgatatatcatataagg 41508903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 52459376 - 52459420
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctac 93  Q
    |||||||||||||||||| |||||| | ||| |||||||||||||    
T  52459376 ggtgctaaaatttcagtctacttcgcatgtgttattgttctctac 52459420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 49 - 228
Target Start/End: Original strand, 44310740 - 44310919
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||||||||||||||||  |||| | | ||||||||||||||||||   ||| |||||||||||||||| |||| | | ||||||||||| ||||||||     
T  44310740 ggtgctaaaatttcagtatactttgcatgtgctattgttctctacttctacgatattttattttgttttggtgtgtatagagtatttgatttattttcag 44310839  T
Q  146 atgttgcnnnnnnnnnnncatttatttgatagtgaaaagtggggggaaaaacgaaatgaagaggtaataaaatcacaacaatg 228  Q
    ||||||            |||||||||| |||||||||| |     ||||||||||||||||| |||||||| ||||||||||    
T  44310840 atgttg---tctaaaaaacatttatttggtagtgaaaagcgaaataaaaaacgaaatgaagagctaataaaagcacaacaatg 44310919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 42055795 - 42055721
Alignment:
Q  81 tattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgttgc 152  Q
    ||||||||||||||   |||||||||||||||||||| |||||| |  |||||||||| ||||||||||||||||    
T  42055795 tattgttctctacttctacggtattttattttgttttggtgtctataaagtatttgatttattttcatatgttgc 42055721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 47397147 - 47397002
Alignment:
Q  10 attattcttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattg-ttctcta---ctacggtatttta 105  Q
    ||||||||||| || || | ||||||||| |||||||||||||||||| ||||| || |||||  | ||||||||| |||||||   | ||  |||||||    
T  47397147 attattcttaggtgctatagtttcagtctttatttttcaggtgctaaattttcaatctacttctcaggtgctattgtttctctacgtcaacaatatttta 47397048  T
Q  106 ttttgttttagtgtctgtggagtatttgatgtattttcatatgttg 151  Q
    |||||||||  ||  | | ||||||||||| |||||||||||||||    
T  47397047 ttttgttttgatgaatattgagtatttgatttattttcatatgttg 47397002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 49228367 - 49228283
Alignment:
Q  10 attattcttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctctact 94  Q
    ||||||||||| || |||||||||| ||||||| ||| |||||||||||||| ||||  ||||| |  |||||||||||| ||||    
T  49228367 attattcttaggtgctaaaatttcaatctctatcttttaggtgctaaaatttaagtctgcttcgcagatgctattgttctttact 49228283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 9023664 - 9023732
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataagg 260  Q
    ||||||||||||||||| |||||||| ||||||||||  |||| |||  ||||||| |||||| |||||    
T  9023664 aaaaacgaaatgaagagctaataaaaacacaacaatgagctaaaaaaaattatgatgtattatgtaagg 9023732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 9023516 - 9023621
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctact---acggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||| ||||||||||||  |||||| | ||  ||||||||||||||   ||| |||||||||||||||| |||||| | |||||||| || ||| ||||     
T  9023516 ggtggtaaaatttcagtatacttcgcatgtattattgttctctacttttacgatattttattttgttttggtgtctatagagtatttaatttatattcag 9023615  T
Q  146 atgttg 151  Q
    ||||||    
T  9023616 atgttg 9023621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 47559369 - 47559248
Alignment:
Q  26 aaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctctactac---ggtattttattttgttttagtgtctg 122  Q
    ||||| ||||||| |||||||||||||||||||||||| |  ||||   | ||  |||||||||||||| |    |||||||||||| |||| |||| |     
T  47559369 aaaatatcagtctttatttttcaggtgctaaaatttcaatttactttacaggtcttattgttctctacttctctcgtattttattttattttggtgttta 47559270  T
Q  123 tggagtatttgatgtattttca 144  Q
    | ||||||||||| ||||||||    
T  47559269 tagagtatttgatttattttca 47559248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 48596363 - 48596258
Alignment:
Q  50 gtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    ||||||||||||||||| |||||  | |||||||| |||||||   |||||||| |||||||||||||| |||| | | || ||||| || ||||||||     
T  48596363 gtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgtgtatagaatatttaatttattttcag 48596264  T
Q  146 atgttg 151  Q
    ||||||    
T  48596263 atgttg 48596258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 1346163 - 1346129
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaa 226  Q
    ||||||||||||||||| |||||||||||||||||    
T  1346163 aaaaacgaaatgaagagctaataaaatcacaacaa 1346129  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 42055682 - 42055640
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatggactaa 234  Q
    ||||||||||||||||| |||||||| |||||||||| |||||    
T  42055682 aaaaacgaaatgaagagctaataaaaacacaacaatgaactaa 42055640  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 9957620 - 9957653
Alignment:
Q  193 aaaacgaaatgaagaggtaataaaatcacaacaa 226  Q
    |||||||||||||||| |||||||||||||||||    
T  9957620 aaaacgaaatgaagagctaataaaatcacaacaa 9957653  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 28945530 - 28945403
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttt 113  Q
    |||||||| |||| ||||||  ||| | || ||||||||||||||||||  |||| | |   ||||||||||||||   ||| |||||||| ||| ||||    
T  28945530 ttagatgtcaaaaattcagtgcctactatttaggtgctaaaatttcagtttactttggagaagctattgttctctaatcctatggtattttgtttagttt 28945431  T
Q  114 tagtgtctgtggagtatttgatgtattt 141  Q
    | || ||| ||||||||||||| |||||    
T  28945430 tggtttctatggagtatttgatttattt 28945403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 32178216 - 32178183
Alignment:
Q  193 aaaacgaaatgaagaggtaataaaatcacaacaa 226  Q
    |||||||||||||||| |||||||||||||||||    
T  32178216 aaaacgaaatgaagagctaataaaatcacaacaa 32178183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 12028365 - 12028433
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatggactaataaattttatgatctattatataagg 260  Q
    ||||| || |||||||| |||||||||||||| |||   |||| ||||||||| || ||||||||||||    
T  12028365 aaaaatgagatgaagagttaataaaatcacaataataagctaacaaattttattatgtattatataagg 12028433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 17967336 - 17967230
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||||||| |||||  | |||||||| |||||||   |||||||| ||||||||||||||  ||| | | || ||||| || ||||||||    
T  17967336 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttgatgtatatagaatatttaatttattttca 17967237  T
Q  145 tatgttg 151  Q
     ||||||    
T  17967236 gatgttg 17967230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 21906471 - 21906545
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgt 119  Q
    |||||||||||||||||| |||||  | |||||||| |||||||   |||||||| |||||||||||||| ||||    
T  21906471 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgt 21906545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 26465169 - 26465275
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggta-ttttattttgttttagtgtctgtggagtatttgatgtattttca 144  Q
    |||||||||||||||||| |||||  | |||||||| |||||||   |||| ||| |||||||||||||| |||| | | || ||||| || ||||||||    
T  26465169 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacagtatttttattttgttttggtgtatatagaatatttaatttattttca 26465268  T
Q  145 tatgttg 151  Q
     ||||||    
T  26465269 gatgttg 26465275  T

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Target: scaffold0385 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 1065 - 1164
Alignment:
Q  54 taaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttagtgtctgtggagtatttgatgtattttcatatgtt 150  Q
    |||||||| |||| |||| | | ||||||||||||| ||   ||| | |||||||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  1065 taaaattttagtctactttgcatgtgctattgttctatatttctatgatattttattttgttttggtgtctatggagtatttgatttattttcatatgtt 1164  T

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Target: scaffold0385; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 1206 - 1275
Alignment:
Q  192 aaaaacgaaatgaagaggtaataaaatcacaacaatg-ga-ctaataaattttatgatctattatataag 259  Q
    ||||| |||||||| |  |||||||||||||| |||| || ||||||||||||||||| |||||||||||    
T  1206 aaaaatgaaatgaataattaataaaatcacaataatgagagctaataaattttatgatgtattatataag 1275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 21190 - 21086
Alignment:
Q  49 ggtgctaaaatttcagtcaacttcgtaagtgctattgttctctac---tacggtattttattttgttttagtgtctgtggagtatttgatgtattttcat 145  Q
    |||||||||||||| ||| |||||||| |||||||||||||| ||   | |||||||||| |||||||| |||||  | ||||||||||| ||||||||     
T  21190 ggtgctaaaatttcggtctacttcgtaggtgctattgttctcaacttttgcggtatttta-tttgttttggtgtcaatagagtatttgatttattttcaa 21092  T
Q  146 atgttg 151  Q
    ||||||    
T  21091 atgttg 21086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 18359 - 18289
Alignment:
Q  43 ttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttg 110  Q
    |||| ||||||||||||||||||| ||||| |||||| ||||||||||||   ||| ||||||||||||||    
T  18359 ttttaaggtgctaaaatttcagtctacttcataagtgttattgttctctacttctatggtattttattttg 18289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 41096 - 41159
Alignment:
Q  78 tgctattgttctctactacggtattttattttgttttagtgtctgtggagtatttgatgtattt 141  Q
    |||||||||||||| ||||| |||||||||||||||| |||||| |  |||||||||| |||||    
T  41096 tgctattgttctcttctacgatattttattttgttttggtgtctataaagtatttgatttattt 41159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 2527 - 2400
Alignment:
Q  17 ttagatgttaaaatttcagtctctatttttcaggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttt 113  Q
    |||||| | |||| |||||| |||| | || ||||||||||||||||||  |||||| |   ||||||||||||||   ||| |||||||| ||| ||||    
T  2527 ttagatatcaaaaattcagtgtctactatttaggtgctaaaatttcagtatacttcggagaagctattgttctctaatcctatggtattttgtttagttt 2428  T
Q  114 tagtgtctgtggagtatttgatgtattt 141  Q
    | || |||  |||||||||||| |||||    
T  2427 tggtttctacggagtatttgatttattt 2400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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