View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_low_4 (Length: 423)
Name: NF5659_low_4
Description: NF5659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 154 - 394
Target Start/End: Original strand, 26377451 - 26377691
Alignment:
| Q |
154 |
atgtgaccggaggaagtaagtgtttgtcaatttaccaaacgaaagggatacaaactttttcaaatatgtttcacatgtgtgaaattggaccatgtgggct |
253 |
Q |
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| T |
26377451 |
atgtgaccggaggaaatacatgtttgtcaatttaccaaacgaaagggatacaaactttttcaaatatgtttcgcatgtgtgaaattggaccatgtgggct |
26377550 |
T |
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| Q |
254 |
aattgatcaaacaattgttttgtgccaaactttggatgatgatgtgattatctgcatacctctttgttccgttgattggtatatcgcttgggttttaaaa |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26377551 |
aattgatcaaacaattgttttgtgccaaactttggatgatgatgtgatcatctgcatacctctttgttccgttgattggtatatcgcttgggttttaaaa |
26377650 |
T |
|
| Q |
354 |
ttgtcaattaggagtctatcttcggcacaaaggcataactc |
394 |
Q |
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| T |
26377651 |
ttgttaattagtagtctatcttcggcacaaaggcataactc |
26377691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 26377261 - 26377341
Alignment:
| Q |
14 |
agaaaaagcatttattatataatcacaaaccccttttta--tgtttgaagattactgcctactccttccggtcatatttat |
92 |
Q |
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| T |
26377261 |
agaaaaagtatttattatataatcacaaacccctttttatgtgtttgaagattactacctactccctccggtcatatttat |
26377341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 26377373 - 26377424
Alignment:
| Q |
106 |
aactaatgtatccagtcataattataggtcagatgcattacatattcaatgt |
157 |
Q |
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| T |
26377373 |
aactaatgtatccggtcataattataggctagatgcattacatattcaatgt |
26377424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 18147860 - 18147893
Alignment:
| Q |
106 |
aactaatgtatccagtcataattataggtcagat |
139 |
Q |
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| T |
18147860 |
aactaatgtatccagtcataattataggtcagat |
18147893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 273 - 404
Target Start/End: Original strand, 23457191 - 23457320
Alignment:
| Q |
273 |
ttgtgccaaactttggatgatgatgtgattatctgcatacctctttgttccgttgattggtatatcgcttggg--ttttaaaattgtcaattaggagtct |
370 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
23457191 |
ttgtgccaaactttggatgatgatgtgattatttgcatacctctttgttccgttgattggtatatcgcttgggttttttaaaattg----ttaggagtcc |
23457286 |
T |
|
| Q |
371 |
atcttcggcacaaaggcataactctccacttgcc |
404 |
Q |
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| T |
23457287 |
atcttcggcacaaaggcatgactctccacctgcc |
23457320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 209 - 357
Target Start/End: Complemental strand, 366210 - 366062
Alignment:
| Q |
209 |
tttttcaaatatgtttcacatgtgtgaaattggaccatgtgggctaattgatcaaacaattgttttgtgccaaactttggatgatgatgtgattatctgc |
308 |
Q |
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|||||||||||||| | ||| |||||||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||| ||||||||||||||| | | |
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| T |
366210 |
tttttcaaatatgtctgacaagtgtgaaattggaccatgggggctaattgatccaacaattattttgtgccaagctttgggtgatgatgtgattatttac |
366111 |
T |
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| Q |
309 |
atacctctttgttccgttgattggtatatcgcttgggttttaaaattgt |
357 |
Q |
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|||||| | ||||| | ||||| ||||||||||||||||| ||||||| |
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| T |
366110 |
atacctttctgttctgctgattcttatatcgcttgggttttcaaattgt |
366062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 24419582 - 24419633
Alignment:
| Q |
106 |
aactaatgtatccagtcataattataggtcagatgcattacatattcaatgt |
157 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||| |||||||||| |
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| T |
24419582 |
aactaatgtatccagtcataattataagtcagatacattaattattcaatgt |
24419633 |
T |
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