View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_low_5 (Length: 400)
Name: NF5659_low_5
Description: NF5659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 9727945 - 9728326
Alignment:
| Q |
1 |
tccctctaacaagcattggatgaaaatttataacacctatttcatcatgcatttttccctagtatgtttgcaatttgcatcaatgaatgcaatcaaatag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
9727945 |
tccctctaacaagcattggatgaaaatttataacacctatttcatcatgcatttttcactagtatgtttgcaattggcattaatgaatgcaatcaaatag |
9728044 |
T |
|
| Q |
101 |
gaaaatattcgttagtaagcaactattgcgaaagacttaccatctgcttccaatgtaaaatcgaagctctaagaattgagacgaatgtagtcgaatccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9728045 |
gaaaatattcgttagtaagcaactattgcgaaagacttaccatctgcttccaatgtaaaatcgaagctctaagaattgagacgaatgtagtcgaatccat |
9728144 |
T |
|
| Q |
201 |
aggctgatccagctccacaataacgccgccatacttatcatcagttgatgttagtactttaacccgttgaacttgatcatcttccgccgttgacatgcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9728145 |
aggctgatccagctccacaataacgccgccatacttatcatcggttgattttagtactttaacccgttgaacttgatcatctgccgccgttgacatgcat |
9728244 |
T |
|
| Q |
301 |
cgaataggaacagccgttgtcactccaatcttaactagtaaggaaaaatgagaaaatgaaacatgttagattacatacaaaa |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9728245 |
cgaataggaacagccgttgtcactccaatcttaactagtaaggaaaaatgagaaaatgaaacatgttagattacatacaaaa |
9728326 |
T |
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