View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5659_low_6 (Length: 398)
Name: NF5659_low_6
Description: NF5659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 29525683 - 29525298
Alignment:
| Q |
1 |
tctgaactttgttaacaatctctggtcttatctcttccctctgtttaaatgttccttataattcttattctgtaggaatttatagttttcttgtttactg |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
29525683 |
tctgaattttgttaacaatctctggtcttatctcttccctctgtttaaatgttccttataattcttgttctgtaggaatttatagttttcttgtt-actg |
29525585 |
T |
|
| Q |
101 |
ttactgtttataattctttatttccgccaaaaatgtcttttagaactcagaattcgtcatcagacacattgtatttcttgcacattctatacggtttctg |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29525584 |
ttactgtttataattctttatttctgccaaaaatgtcttttagaactcagaattcgtcatcagacacattgtatttcttgcacattctatacggtttctg |
29525485 |
T |
|
| Q |
201 |
attttatattaattcatttgttcctcggaatccgaacacattgaaattgttattttatacggtgttgggtgtacagtgttgaaattgtttccgagttcct |
300 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29525484 |
attttatattaattcattttttcctcgtaatccgaacaaattgaaattgttattctatacggtgttgggtgtacagtgttgaaattgtttccgagttcct |
29525385 |
T |
|
| Q |
301 |
gtgatgttattgccattgtccatatatatggattnnnnnnntcctttacgatgctacaacatttactgaattttcttcaagtataat |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29525384 |
gtgatgttattgccattgtccatatatatggattaaacaaatcctttacgatgctacaacatttactgaattttcttcaagtataat |
29525298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University