View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5661-Insertion-1 (Length: 1050)

Name: NF5661-Insertion-1
Description: NF5661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5661-Insertion-1
NF5661-Insertion-1
[»] chr4 (3 HSPs)
chr4 (164-677)||(28731551-28732070)
chr4 (8-169)||(28731316-28731477)
chr4 (751-905)||(28732619-28732780)
[»] chr8 (9 HSPs)
chr8 (164-527)||(38121977-38122348)
chr8 (9-169)||(38121743-38121903)
chr8 (164-346)||(38607967-38608146)
chr8 (164-346)||(38792750-38792929)
chr8 (8-161)||(38608228-38608381)
chr8 (8-161)||(38793011-38793164)
chr8 (392-505)||(38607792-38607903)
chr8 (392-505)||(38792575-38792686)
chr8 (392-496)||(38607185-38607287)
[»] chr1 (2 HSPs)
chr1 (9-169)||(31529271-31529431)
chr1 (8-169)||(51801338-51801499)
[»] chr7 (1 HSPs)
chr7 (8-169)||(34875789-34875950)


Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 164 - 677
Target Start/End: Original strand, 28731551 - 28732070
Alignment:
Q  164 ggaagtaatgcagtgtgagagaagaacgaatgttcttgaagatcatgtggaggtggcggtgggaatgaagcttcgattccttcagtggcggtgtcgacgt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  28731551 ggaagtaatgcagtgtgagagaagaacgaatgttcttgaagatcatgtggaggtggcggtgggaatgaagcttcgattccttcagtggcggtgacaacgt 28731650  T
Q  264 caccagaaagcatggcggtgaagaagattgcgaagaagagcatcgagaatcgcagagaggaaaaggttgaatagttttccatgacagtgaagaagatttc 363  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||    
T  28731651 caccggaaagcatggcggtgaagaagattgcgaagaagagcatcgagaatcgcagagaggaaaaggttgaagagttttccatggcggtgaagaagatttc 28731750  T
Q  364 aagtctcaagagagtgaattcgagtgtgaaatgaagggaatgatgatgaaatgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggtta 463  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28731751 aagtctcaagagagtgaattcgagtgtgaaatgaatggaatgatgatgaaatgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggtta 28731850  T
Q  464 gaagagagtattgtaagcgtgtgagtttgttacgcggttgttctagatttaaacgatttcgaatgtaagcgtgtgaatgaagc----ttttttttatggn 559  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    ||||||||||||     
T  28731851 gaagagagtattgtaagcgtgttagtttgttacgcggttgttctagatttaaacgatttcgaatgtaagcgtgcgaatgaagcttttttttttttatgga 28731950  T
Q  560 nnnnnnttaagctc--nnnnnnnnnnnnacaatggaaataattaagctcttaagtaccctatattttttattcatatattaatactattttttcctccat 657  Q
          ||||||||              |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||    
T  28731951 aaaaaattaagctcttttttttttttttacaatggaaataattaagctcttaagtaccctatatattttattcatatattaatactgtttttttctccat 28732050  T
Q  658 gtgtcaatgaaggtacctaa 677  Q
    ||||||||||||||||||||    
T  28732051 gtgtcaatgaaggtacctaa 28732070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 28731316 - 28731477
Alignment:
Q  8 gatcttggtgccaaaagcaagacgccggagatattcgatggtgaatatacctggaacgatgtgttcacggaggagattcgaaacagagcaagaaaaacaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28731316 gatcttggtgccaaaagcaagacgccggagatattcgatggtgaatatacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaaacaa 28731415  T
Q  108 gtgcggatcgatgcatcagagggagcgaaaatggtgaaaggaccggtccaagcaagggaagt 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28731416 gtgcggatcgatgcatcagagggagcgaaaatggtgaaaggaccggtccaagcaagggaagt 28731477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 751 - 905
Target Start/End: Original strand, 28732619 - 28732780
Alignment:
Q  751 aatttatacgttgtctatattttgactcatatatgaatgcaagtagctaattttatttagtaacaaatgtgtctagatttttataa-----agagcaaag 845  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||    
T  28732619 aatttatacattgtctatatttttactcatatatgaatgcaagtagctaattttatttagtaacaaatgtgtctagatttttataaagagcagagcaaag 28732718  T
Q  846 catggtaaccaatatcacttt-aaaacaagatagaataggacat-aacatacattactaggg 905  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||    
T  28732719 catggtaaccaatatcactttaaaaacaagatagaagaggacataaacatacattactaggg 28732780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 164 - 527
Target Start/End: Original strand, 38121977 - 38122348
Alignment:
Q  164 ggaagtaatgcagtgtgagagaagaacgaatgttcttgaagatcatgtggaggtggcggtgggaatgaagcttcgattccttcagtggcggtgtcgacgt 263  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |  |||    
T  38121977 ggaagtaatgcagtttgagagaagaacgaatgttcttgaagatcgtgcggaggtggcggtgggaatgaagcttcgattccttcagtggcggtgacctcgt 38122076  T
Q  264 caccagaaagcatggcggtgaagaagattgcgaagaagagcatcgagaatcgcagagaggaaaaggttgaatagttttccatgacagtgaagaaga---- 359  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||   || |||||||        
T  38122077 caccggaaagcatggcggtgaagaagattgcgaagaagagcatagagaatcgcatagaggaaaaggttgaagagttttccatggtggttaagaagattca 38122176  T
Q  360 ----tttcaagtctcaagagagtgaattcgagtgtgaaatgaagggaatgatgatgaaatgcagggtgaagtatttatatacgcgcgcgcggggaaatga 455  Q
        |||||||||||||||||||||||||||||||||| ||||  |||||| |||||| ||||||||||||||||||||||||||||||||||||||| |    
T  38122177 gaggtttcaagtctcaagagagtgaattcgagtgtgaattgaatcgaatgaagatgaattgcagggtgaagtatttatatacgcgcgcgcggggaaatta 38122276  T
Q  456 aacggttagaagagagtattgtaagcgtgtgagtttgttacgcggttgttctagatttaaacgatttcgaat 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  38122277 aacggttagaagagagtattgtaagcgtgtgagtttgttacgcggttgttatagatttaaacgtttttgaat 38122348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 38121743 - 38121903
Alignment:
Q  9 atcttggtgccaaaagcaagacgccggagatattcgatggtgaatatacctggaacgatgtgttcacggaggagattcgaaacagagcaagaaaaacaag 108  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||||    
T  38121743 atcttggtgccaaaagcaagtcgccgaagatattcgatggtgaatatacctggaactatgtgttcacgaaggagattcggaacagagcaagaaaagcaag 38121842  T
Q  109 tgcggatcgatgcatcagagggagcgaaaatggtgaaaggaccggtccaagcaagggaagt 169  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38121843 tgcgaagcgatgcatcagagggagcgaaaatggtgaaaggaccggtccaagcaggggaagt 38121903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 164 - 346
Target Start/End: Complemental strand, 38608146 - 38607967
Alignment:
Q  164 ggaagtaatgcagtgtgagagaagaacgaatgttcttgaagatcatgtggaggtggcggtgggaatgaagcttcgattccttcagtggcggtgtcgacgt 263  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||  ||||||||||||||| |   ||    
T  38608146 ggaagtaatgtggtgtgagagaagaacgaatgttcttgaagatcatgtggaggtagcggtgggattgaaggttcgaaaccttcagtggcggtgaccttgt 38608047  T
Q  264 caccagaaagcatggcggtgaagaagattgcgaagaagagcatcgagaatcgcagagaggaaaaggttgaatagttttccatg 346  Q
    |||| ||||||||| |||||||||||||||||   ||||||||||||||||| ||||| |||||||||||| || ||||||||    
T  38608046 caccggaaagcatgacggtgaagaagattgcg---aagagcatcgagaatcgaagagaagaaaaggttgaagagctttccatg 38607967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 164 - 346
Target Start/End: Complemental strand, 38792929 - 38792750
Alignment:
Q  164 ggaagtaatgcagtgtgagagaagaacgaatgttcttgaagatcatgtggaggtggcggtgggaatgaagcttcgattccttcagtggcggtgtcgacgt 263  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||  ||||||||||||||| |   ||    
T  38792929 ggaagtaatgtggtgtgagagaagaacgaatgttcttgaagatcatgtggaggtagcggtgggattgaaggttcgaaaccttcagtggcggtgaccttgt 38792830  T
Q  264 caccagaaagcatggcggtgaagaagattgcgaagaagagcatcgagaatcgcagagaggaaaaggttgaatagttttccatg 346  Q
    |||| ||||||||| |||||||||||||||||   ||||||||||||||||| ||||| |||||||||||| || ||||||||    
T  38792829 caccggaaagcatgacggtgaagaagattgcg---aagagcatcgagaatcgaagagaagaaaaggttgaagagctttccatg 38792750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 38608381 - 38608228
Alignment:
Q  8 gatcttggtgccaaaagcaagacgccggagatattcgatggtgaatatacctggaacgatgtgttcacggaggagattcgaaacagagcaagaaaaacaa 107  Q
    ||||||||||||||||| |||    || | ||| ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  38608381 gatcttggtgccaaaaggaagcgtacgcaaatactcgatagtgaataaacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaa 38608282  T
Q  108 gtgcggatcgatgcatcagagggagcgaaaatggtgaaaggaccggtccaagca 161  Q
    ||||| | ||| ||||| |||||||||||||||||  |||||||||||||||||    
T  38608281 gtgcgaagcgaagcatcggagggagcgaaaatggtagaaggaccggtccaagca 38608228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 38793164 - 38793011
Alignment:
Q  8 gatcttggtgccaaaagcaagacgccggagatattcgatggtgaatatacctggaacgatgtgttcacggaggagattcgaaacagagcaagaaaaacaa 107  Q
    ||||||||||||||||| |||    || | ||| ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  38793164 gatcttggtgccaaaaggaagcgtacgcaaatactcgatagtgaataaacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaa 38793065  T
Q  108 gtgcggatcgatgcatcagagggagcgaaaatggtgaaaggaccggtccaagca 161  Q
    ||||| | ||| ||||| |||||||||||||||||  |||||||||||||||||    
T  38793064 gtgcgaagcgaagcatcggagggagcgaaaatggtagaaggaccggtccaagca 38793011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 392 - 505
Target Start/End: Complemental strand, 38607903 - 38607792
Alignment:
Q  392 aaatgaagggaatgatgatgaaatgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggttagaagagagtattgtaagcgtgtgagttt 491  Q
    ||||||| |||| || |||||||||||| |||||||| |||||||||||||||||||| | |||||| ||||| ||||| | |||||| |||||||||||    
T  38607903 aaatgaatggaacgaggatgaaatgcagagtgaagtacttatatacgcgcgcgcgggggagtgaaactgttag-agaga-ttttgtaatcgtgtgagttt 38607806  T
Q  492 gttacgcggttgtt 505  Q
    ||||||||||||||    
T  38607805 gttacgcggttgtt 38607792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 392 - 505
Target Start/End: Complemental strand, 38792686 - 38792575
Alignment:
Q  392 aaatgaagggaatgatgatgaaatgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggttagaagagagtattgtaagcgtgtgagttt 491  Q
    ||||||| |||| || |||||||||||| |||||||| |||||||||||||||||||| | |||||| ||||| ||||| | |||||| |||||||||||    
T  38792686 aaatgaatggaacgaggatgaaatgcagagtgaagtacttatatacgcgcgcgcgggggagtgaaactgttag-agaga-ttttgtaatcgtgtgagttt 38792589  T
Q  492 gttacgcggttgtt 505  Q
    ||||||||||||||    
T  38792588 gttacgcggttgtt 38792575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 392 - 496
Target Start/End: Complemental strand, 38607287 - 38607185
Alignment:
Q  392 aaatgaagggaatgatgatgaaatgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggttagaagagagtattgtaagcgtgtgagttt 491  Q
    ||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||  |  | ||||| |||||| ||| | ||||||||||||||||||||    
T  38607287 aaatgaatggaatgaggatgaaatgcagagtgaagtacttatatacgcgcgcgcaagagagtgaaatggttag-aga-aatattgtaagcgtgtgagttt 38607190  T
Q  492 gttac 496  Q
    |||||    
T  38607189 gttac 38607185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 31529271 - 31529431
Alignment:
Q  9 atcttggtgccaaaagcaagacgccggagatattcgatggtgaatatacctggaacgatgtgttcacggaggagattcgaaacagagcaagaaaaacaag 108  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  31529271 atcttggtgccaaaagcaagtcgccggagatattcgatggtgaatatacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaag 31529370  T
Q  109 tgcggatcgatgcatcagagggagcgaaaatggtgaaaggaccggtccaagcaagggaagt 169  Q
    |||| | ||| |||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  31529371 tgcgaagcgaagcatcagagggagcgaaaatagtgaaaggaccggtccaagcaggggaagt 31529431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 51801338 - 51801499
Alignment:
Q  8 gatcttggtgccaaaagcaagacgccggagatattcgatggtgaatatacctggaacgatgtgttcacggaggagattcgaaacagagcaagaaaaacaa 107  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||| |||    
T  51801338 gatcttggtgccaaaagcaagtcgccggaggtatttgatggtgaatatatctggaacgatgtgttcacggaggagattcggaacacagcaagaaaagcaa 51801437  T
Q  108 gtgcggatcgatgcatcagagggagcgaaaatggtgaaaggaccggtccaagcaagggaagt 169  Q
    ||| | | ||| | |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  51801438 gtgtgaagcgaagtatcagagggagcgaaaatagtgaaaggaccggtccaagcaggggaagt 51801499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 1e-59; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 34875950 - 34875789
Alignment:
Q  8 gatcttggtgccaaaagcaagacgccggagatattcgatggtgaatatacctggaacgatgtgttcacggaggagattcgaaacagagcaagaaaaacaa 107  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  34875950 gatcttggtgccaaaagcaagtcgccggagatattcgatggtgaatatacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaa 34875851  T
Q  108 gtgcggatcgatgcatcagagggagcgaaaatggtgaaaggaccggtccaagcaagggaagt 169  Q
    ||| | | ||| |||||| ||||||| ||||| ||||||||||||||||||||| |||||||    
T  34875850 gtgtgaagcgaagcatcaaagggagcaaaaatagtgaaaggaccggtccaagcaggggaagt 34875789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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